Job Description Q46925 Confidence 99.88% Date Thu Jan 5 12:35:54 GMT 2012 Rank 197 Aligned Residues 315 % Identity 16% Template d2cfba1 SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.85

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		17	.	.	20	.	.	.	.	.	.	.	.							.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure														.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.
Query Sequence		Q	D	A	G	V	Y	L	D	S	A	A	T	.	.	.	.	.	.	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	D	D	K	T	I	V	W	T	R	G	T
Query Conservation														.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.																		.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.																		.	.
Template Sequence		V	D	G	N	Q	Y	I	D	Y	V	G	S	W	G	P	A	I	V	G	H	A	H	P	E	V	I	D	A	L	H	A	A	L	E	K	G	T	S	F	G	A	P	.	.	.	.	.	.	.	.	.	C	L	L	E	N	I	L	A	E	M	V	I	A	A	V	P	S	.	.	V	E	M	V	R	F	V	N	S	G
Template Known Secondary structure		T	T							S	S	T	T	T	T	T		T	T		B	T													T	T		S			S	S		.	.	.	.	.	.	.	.	.																S	S	.	.		S						S	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.										.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.				.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.
Query SS confidence																																																																						.	.	.
Query Sequence		T	E	S	I	N	M	V	A	Q	C	Y	A	R	P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	N	A	Q	R	L	P	D	V	D	L	L	P	E	L	I	T	.	.	.	P	R	S	R	I	L	A	L	G
Query Conservation																																																																						.	.	.
Alig confidence																			.	.												.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.											.	.	.
Template Conservation																			.	.												.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Template Sequence		T	E	A	C	M	A	V	L	R	L	M	R	A	Y	T	Q	R	.	.	E	K	V	I	K	F	E	G	C	Y	H	.	.	.	.	.	.	.	.	.	.	.	.	G	H	A	A	T	L	T	A	P	Y	N	.	.	.	.	.	D	L	E	A	V	S	R	L	F	E	Q	Y	P	N	D	I	A	G	V	I	L	E
Template Known Secondary structure																	T		.	.								T				.	.	.	.	.	.	.	.	.	.	.	.										T	T	.	.	.	.	.												S	T	T	T
Template Predicted Secondary structure																			.	.												.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.													130	.	.	.	.	.	.	.	.	.	140						.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		168	.	170	.	.	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.					.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.																																		.	.	.	.
Query SS confidence													.	.	.	.																																		.	.	.	.
Query Sequence		Q	M	S	N	V	T	G	G	C	P	D	.	.	.	.	L	A	R	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	P	A	D	V	Q	Q	L	.	.	.	.	D	I	D	F	Y	A	F	S	G	H	K	L	Y	G	P	T	G	I	G	V	L	Y	G	K	S	E	L	L
Query Conservation													.	.	.	.																																		.	.	.	.
Alig confidence													.	.	.	.																																		.	.	.	.																.
Template Conservation																																																																					.
Template Sequence		P	V	V	G	N	A	G	F	I	P	P	D	A	G	F	L	E	G	L	R	E	L	T	K	Q	Y	G	A	L	L	V	F	D	E	V	M	T	G	F	R	I	A	Y	G	G	A	Q	E	K	F	G	V	T	P	D	L	T	T	L	G	K	V	I	G	G	G	L	.	P	V	G	A	Y	G	G	R	A	E	I	M
Template Known Secondary structure		S	S	B		S	S	S		B				T	T												T	T								T	T	T	T	T	T	T		T	T							T				S						G	G	G	G	T	T	S	.
Template Predicted Secondary structure																																																																					.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S	R	S	L	A	T	L	A	E	D	A	L	A	K	R	P	G	F	R
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	M	V	A	P	A	G	P	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	N	P	L	A	M	T	A	G	I	K	T	L	E	I	L	S	R	P	G	S	Y	E	H	L	D	R	I	T	G	K	L	V	Q	G	L	L	D	A	A	R	E	F	G	H	E
Template Known Secondary structure		T	T	S		T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T	S	T	T																						T	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.																								280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.															.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	F	R	C	Q	D	S	S	L	L	A	F	D	F	A	G	V	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	T	L	R	A	S	F	A	P	Y	N	T	K	S	D	V
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	C	G	G	H	I	S	G	M	F	G	L	F	F	T	A	G	P	V	T	N	Y	E	Q	A	K	Q	S	D	L	K	K	F	A	A	F	H	R	G	M	L	E	Q	G	I	Y	L	A	P	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	A	G	F	T	S	L	A	H	T	E	A	D	I
Template Known Secondary structure								T	T						S	S	S				S	S					T	T	S															T	T					S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S						T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.															.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	L	V	N	A	V	D	R	A	L	E	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	T	I	A	A	A	R	T	V	L	S	Q	L
Template Known Secondary structure													T	T
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions