Job Description Q46925 Confidence 99.88% Date Thu Jan 5 12:35:54 GMT 2012 Rank 196 Aligned Residues 333 % Identity 17% Template d1tpla_ SCOP info PLP-dependent transferase-like PLP-dependent transferases Beta-eliminating lyases Resolution 2.30

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		16	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		L	Q	D	A	G	V	Y	L	D	.	.	.	S	A	A	T	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	D	D	K	T	I	V	W	T	R	G	T	T	E
Query Conservation											.	.	.
Alig confidence											.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Sequence		L	N	S	K	D	I	Y	I	D	L	L	T	D	S	G	T	N	A	M	S	D	K	Q	W	A	G	M	M	M	G	D	E	A	Y	A	G	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	N	F	Y	H	L	E	R	T	V	Q	E	L	F	G	F	.	.	.	K	H	I	V	P	T	H	Q	G	R	G
Template Known Secondary structure		S		G	G	G		S				S		S	S	S													T	T					S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	S						S	S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.														.	.	.	.	80	.	.	.	.	.	.	.	.	.	90				.	.	.	.	.	.	.	.	.	100	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.
Query SS confidence																																																																				.	.	.	.
Query Sequence		S	I	N	M	V	A	Q	C	Y	A	R	P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	N	A	Q	R	L	P	D	V	D	L	L	P	E	L	I	T	.	.	.	.	P	R	S	R	I	L	A	L	G	Q
Query Conservation																																																																				.	.	.	.
Alig confidence											.	.	.	.																							.	.	.	.																												.	.	.	.
Template Conservation											.	.	.	.																							.	.	.	.
Template Sequence		A	E	N	L	L	S	Q	L	A	.	.	.	.	I	K	P	G	Q	Y	V	A	G	N	M	Y	K	N	G	A	V	F	V	D	I	V	.	.	.	.	R	D	E	A	H	D	A	G	L	N	I	A	F	K	G	D	I	D	L	K	K	L	Q	K	L	I	D	E	K	G	A	E	N	I	A	Y	I	C	L	A	V
Template Known Secondary structure											.	.	.	.			T	T						S					S	S						B	.	.	.	.		T	T	S	S		S	S				T	T	T	T		B														G	G	G								S
Template Predicted Secondary structure											.	.	.	.																							.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110					.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		169	170	.	.	.	.					.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.																		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	N	V	T	G	.	.	.	.	G	C	P	D	L	A	R	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	P	A	D	V	Q	Q	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	F	Y	A	F	S	G	H	K	L	Y	G	P	T
Query Conservation								.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	N	L	A	G	G	Q	P	V	S	M	A	N	M	R	A	V	R	E	L	T	A	A	H	G	I	K	V	F	Y	D	A	T	R	C	V	E	N	A	Y	F	I	K	E	Q	E	Q	G	F	E	N	K	S	I	A	E	I	V	H	E	M	F	S	Y	A	D	G	C	T	M	S	G	K	K	D	C	L	V	N
Template Known Secondary structure		S	B		S	T	T		B																	T	T								T	T												S	T	T		T	T	S												T	S	S						T	T	T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	G	V	L	Y	G	K	S	E	L	L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S	R	S	L	A	T	L
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	G	G	F	L	C	M	N	D	D	E	M	F	S	S	A	K	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	V	Y	E	G	M	P	S	Y	G	G	L	A	G	R	D	M	E	A	M	A	I	G	L	R	E	A	M	Q	Y	E	Y	I	E	H	R	V	K	Q	V	R	Y
Template Known Secondary structure		S																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S			S	S	S																T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.																			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.										.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.												.
Query SS confidence																													.	.	.	.	.	.	.	.	.												.
Query Sequence		A	E	D	A	L	A	K	R	P	G	F	R	S	F	R	C	Q	D	S	S	L	L	A	F	D	F	A	.	.	.	.	.	.	.	.	.	G	V	H	H	S	D	M	V	T	L	L	.	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	T	L	R	A	S	F	A
Query Conservation																													.	.	.	.	.	.	.	.	.												.
Alig confidence										.																			.	.	.	.	.	.	.	.	.												.													.	.	.	.	.	.	.	.	.	.
Template Conservation										.																																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	D	K	L	K	A	A	.	G	V	P	I	V	E	P	V	G	G	H	A	V	F	L	D	A	R	R	F	C	E	H	L	T	Q	D	E	F	P	A	Q	S	L	A	A	S	I	Y	V	E	T	G	V	R	S	M	E	R	G	I	.	.	.	.	.	.	.	.	.	.	K	L	E	T	V	R	L	T	I	P
Template Known Secondary structure								T	T	.	T			B		S	S			S	S										T	T	T	S		G	G	G															S									.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.																																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		325	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.											.	.	.	.	.	.	390	.	.	.
		378	.	380		.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		P	Y	N	.	T	K	S	D	V	D	A	L	V	N	A	V	D	R	A	L	E	L	L	V	D
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		R	R	V	Y	T	Y	A	H	M	D	V	V	A	D	G	I	I	K	L	Y	Q	H	K	E	D
Template Known Secondary structure		T	T	S																		T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions