Phyre 2 alignment of Q46925 with d1gc0a

Job Description Q46925
Confidence 99.92% Date Thu Jan 5 12:35:54 GMT 2012

Rank 160 Aligned Residues 296

% Identity 19% Template d1gc0a_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like

Resolution 1.70

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	D	D	K	T	I	V	W	T	R	G	T	T	E	S	I	N	M	V	A	Q	C	Y	A	R	P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L
Query Conservation
Alig confidence																	.	.	.																					.	.	.	.
Template Conservation																	.	.	.																					.	.	.	.
Template Sequence	P	T	L	N	L	L	E	A	R	M	A	S	L	E	G	G	.	.	.	E	A	G	L	A	L	A	S	G	M	G	A	I	T	S	T	L	W	T	L	.	.	.	.	L	R	P	G	D	E	V	L	L	G	N	T	L	Y	G	C	T	F	A	F	L	H	H	G	I	G	E	F	G	V	K	L	R	H	V	D	M
Template Known Secondary structure															T		.	.	.	S						S	S													.	.	.	.			T	T							S	S			S									T	G	G	G	G	T								T
Template Predicted Secondary structure																	.	.	.																					.	.	.	.
Template SS confidence
	65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80				.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100					.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.

	143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	A	Q	R	L	P	D	V	D	L	L	P	E	L	I	T	P	R	S	R	I	L	A	L	G	Q	M	S	N	V	T	G	G	C	P	D	L	A	R	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	P	A	D	V	Q	Q	L	D	I	D	F	Y	A	F	S	G	H	K
Query Conservation
Alig confidence		.	.	.	.	.																																																					.
Template Conservation		.	.	.	.	.																																																					.
Template Sequence	A	.	.	.	.	.	D	L	Q	A	L	E	A	A	M	T	P	A	T	R	V	I	Y	F	E	S	P	A	N	P	N	M	H	M	A	D	I	A	G	V	A	K	I	A	R	K	H	G	A	T	V	V	V	D	N	T	Y	C	.	T	P	Y	L	Q	R	P	L	E	L	G	A	D	L	V	V	H	S	A	T	Y
Template Known Secondary structure	T	.	.	.	.	.											T	T								S	S		T	T	T														G	G	G	T								T	T	T	.							G	G	G	G	T		S
Template Predicted Secondary structure		.	.	.	.	.																																																					.
Template SS confidence
	138						.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.

	223	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence	L	Y	G	P	T	G	I	.	.	G	V	L	Y	G	K	S	E	L	L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W
Query Conservation								.	.
Alig confidence								.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	S	G	H	G	D	I	T	A	G	I	V	V	G	S	Q	A	L	V	D	R	I	R	L	Q	G	L	K	D	M	T	G	A	V	L	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	D	A	A	L	L	M	R	G	I	K	T	L	N	L	R	M	D	R
Template Known Secondary structure		S		S	S	S																			T						T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.																									250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

	301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.			.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																					.																.	.																																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.																.	.																																.	.	.	.	.	.	.	.	.	.	.
Query Sequence	S	R	S	L	A	T	L	A	E	D	A	L	A	K	R	P	G	F	R	S	.	F	R	C	Q	D	S	S	L	L	A	F	D	F	A	G	.	.	V	H	H	S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																					.																.	.																																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																.	.																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	H	C	A	N	A	Q	V	L	A	E	F	L	A	R	Q	P	Q	V	E	L	I	H	Y	P	Q	P	G	G	M	I	A	F	E	L	K	G	G	I	G	A	G	R	R	F	M	N	A	L	Q	L	F	S	R	A	V	S	L	G	D	A	E	S	L	A	Q	H	P	A	S	M	T	H	S	S	Y	T	P	E	E	R
Template Known Secondary structure														T		T	T										T	T							T	T													S	S	S				S			S		S	S						G	G	G	T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
	269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

					367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure	.	.	.	.
Query SS confidence	.	.	.	.
Query Sequence	.	.	.	.	G	V	T	G	T	L	R	A	S	F	A	P	Y	N	T	K	S	D	V	D	A	L	V	N	A	V	D	R	A
Query Conservation	.	.	.	.
Alig confidence	.	.	.	.
Template Conservation
Template Sequence	A	H	Y	G	I	S	E	G	L	V	R	L	S	V	G	L	E	D	I	D	D	L	L	A	D	V	Q	Q	A	L	K	A	S
Template Known Secondary structure			T	T			T	T								S	S
Template Predicted Secondary structure
Template SS confidence
	365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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