Job Description Q46925 Confidence 99.92% Date Thu Jan 5 12:35:54 GMT 2012 Rank 155 Aligned Residues 340 % Identity 16% Template c3rq1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula Resolution 2.20 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	L	D	S	A	A	T	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	D	D	K	T	I	V	W	T	R	G	T	T	E	S	I	N	M	V	A	Q	C
Query Conservation
Alig confidence																												.	.	.	.	.
Template Conservation																												.	.	.	.	.
Template Sequence		A	I	H	D	E	E	G	N	L	V	F	L	K	T	V	K	E	E	Y	L	S	L	S	D	S	E	.	.	.	.	.	H	V	G	Y	A	P	I	A	G	I	P	D	F	L	C	A	A	E	K	E	C	F	G	N	F	R	P	E	G	H	I	R	S	I	A	T	A	G	G	T	G	G	I	H	H	L	I	H	N
Template Known Secondary structure				B		T	T	S		B												T						.	.	.	.	.			S				T	T															G	G	G			S	S								S
Template Predicted Secondary structure																												.	.	.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.						70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.							.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																												.																.	.	.	.	.	.
Query SS confidence																																												.																.	.	.	.	.	.
Query Sequence		Y	A	R	P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	.	N	A	Q	R	L	P	D	V	D	L	L	P	E	L	I	.	.	.	.	.	.	T	P	R	S	R	I	L	A	L	G	Q	M	S	N	V	T
Query Conservation																																												.																.	.	.	.	.	.
Alig confidence			.	.	.	.																							.	.	.	.												.																.	.	.	.	.	.
Template Conservation			.	.	.	.																							.	.	.	.
Template Sequence		Y	.	.	.	.	T	E	P	G	D	E	V	L	T	A	D	W	Y	W	G	A	Y	R	V	I	C	S	.	.	.	.	D	T	G	R	T	L	V	T	Y	S	L	F	D	E	H	N	N	F	N	H	E	A	F	Q	N	R	V	N	E	L	A	A	K	Q	T	N	V	V	V	I	F	N	T	P	G	N	N	P	T
Template Known Secondary structure			.	.	.	.	S		T	T							S	S			T								.	.	.	.		T	T								S	B		T	T	S	S	B																	S									S	S		T	T	T
Template Predicted Secondary structure			.	.	.	.																							.	.	.	.
Template SS confidence
		119					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		174	.	.	.	.	.	180	.	.	.	.	.	.										.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.												.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query SS confidence															.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query Sequence		G	G	C	P	D	L	A	R	A	I	T	F	A	.	.	.	.	.	.	.	.	.	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	.	.	.	.	.	.	.	.	.	.	.	H	F	P	A	D	V	Q	Q	L	D	I	D	F	Y	A	F	S	G	H	K	L	Y	G	P	T	G	.	.	I	G	V
Query Conservation															.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.																											.	.
Alig confidence															.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Conservation
Template Sequence		G	Y	S	I	E	D	K	D	W	D	S	I	L	N	F	L	K	D	L	V	A	I	G	R	N	N	V	I	I	G	I	D	V	A	Y	L	D	Y	S	G	E	K	D	E	V	R	A	F	F	N	K	F	S	H	L	P	K	E	I	L	T	C	V	C	Y	S	L	S	K	G	F	T	X	Y	G	Q	R	V	G	A
Template Known Secondary structure																							T	S	S										T	T	G	G	G	S	S							G	G	G	G	G	G	T	T			T	T									S	T	T	T	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		L	Y	G	K	S	E	L	L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	.	.	I	N	Q	A	E	S	W	S	R	S	L	A	T	L	A	E
Query Conservation																																																																.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	I	G	I	S	D	D	E	E	I	A	D	E	F	F	.	.	.	.	.	.	.	.	.	.	.	E	V	N	K	S	T	S	R	A	T	W	S	N	I	C	R	P	A	X	R	T	X	A	N	I	V	A	D	P	A	K	F	K	E	Y	E	A	E	R	N	C	Y	Y	Q	L	I	R	D	R	A	D	I	F	K
Template Known Secondary structure							S	S									.	.	.	.	.	.	.	.	.	.	.											T	S	S														T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.												.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	L	A	K	R	P	G	F	R	S	F	R	C	Q	D	S	S	L	L	A	F	D	F	A	G	V	H	H	S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	T	L	R	A	S	F	A	P	Y	N	T	K	S	D	V	D	A	L	V
Query Conservation
Alig confidence								.																			.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation								.																			.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Sequence		Q	E	A	A	Q	V	.	G	L	P	X	L	P	Y	R	G	G	F	F	I	T	I	P	T	D	.	.	S	A	N	A	I	C	E	E	L	K	K	E	H	I	Y	V	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	N	G	I	R	I	A	A	C	.	G	I	P	K	C	Q	X	T	G	L	A
Template Known Secondary structure								.	T								S	S	S							T	.	.	T											T	T						.	.	.	.	.	.	.	.	.	.	.	.	.		S	S						G	G	.	G	S						T	T
Template Predicted Secondary structure								.																			.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template SS confidence
		340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.			.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.														.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.
		390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	V	D	R	A	L	E	L	L	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	I	Y	N	A	X	K	S	L	G	K
Template Known Secondary structure											T	T
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions