Job Description Q46925 Confidence 99.95% Date Thu Jan 5 12:35:54 GMT 2012 Rank 96 Aligned Residues 361 % Identity 15% Template c3qguB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii Resolution 1.55 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		A	Q	F	R	A	Q	F	P	A	L	Q	D	A	G	V	Y	L	D	S	A	A	T	.	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	D	D	K	T	I	V
Query Conservation																								.
Alig confidence										.	.													.																																																			.
Template Conservation										.	.																																																																.
Template Sequence		K	A	H	Q	E	K	N	P	.	.	D	A	K	I	I	S	L	G	I	G	D	T	T	E	P	L	P	K	Y	I	A	D	A	M	A	K	A	A	A	G	L	A	T	R	E	G	Y	S	G	Y	G	A	E	Q	G	Q	G	A	L	R	E	A	V	A	S	T	F	Y	G	H	A	G	R	.	A	A	D	E	I	F
Template Known Secondary structure									T	.	.	T							S	S	S																					G	G	G	S						S	S		T	T															T	T	T	T		.		G	G	G
Template Predicted Secondary structure										.	.																																																																.
Template SS confidence
		60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.								.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.
Query Sequence		W	T	R	G	T	T	E	S	I	N	M	V	A	Q	C	Y	A	R	P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	N	A	Q	.	.	.	.	.	.	.	R	L	P	D	V	D	L	L	P	E	L	I	T
Query Conservation																																																														.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.																						.	.	.	.															.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.																						.	.	.	.
Template Sequence		I	S	D	G	S	K	C	D	I	A	R	I	Q	M	M	F	.	.	.	.	.	G	S	K	P	T	V	A	V	Q	D	P	S	Y	P	V	Y	V	D	T	S	V	.	.	.	.	M	M	G	M	T	G	D	H	N	G	T	G	F	D	G	I	E	Y	M	V	C	N	P	D	N	H	F	F	P	D	L	S	K	A
Template Known Secondary structure				S														.	.	.	.	.		S	S	S							S			T								.	.	.	.		T	T		S			B		S	S	S	B	T	T								G	G	G	T	T				T	T	S
Template Predicted Secondary structure																		.	.	.	.	.																						.	.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.						.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.					.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.				.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		P	R	S	R	I	L	A	L	G	Q	M	S	N	V	T	G	G	C	.	.	.	P	D	L	A	R	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	P	A	D	V	Q	Q	L	D	I	D	F	Y	A	F	S	G	H	K	L	Y	G	P	T	G	I	G	V	L	Y	G	K
Query Conservation																				.	.	.
Alig confidence																				.	.	.																																		.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.
Template Sequence		K	R	T	D	I	I	F	F	C	S	P	N	N	P	T	G	A	A	A	T	R	A	Q	L	T	E	L	V	N	F	A	R	K	N	G	S	I	L	V	Y	D	A	A	Y	A	L	Y	I	S	N	P	D	C	P	.	.	.	.	.	.	.	.	K	T	I	Y	E	I	P	G	A	D	E	V	A	I	E	T	C	S
Template Known Secondary structure					S						S	S		T	T	T																				T								T	T	G	G	G				T	T	S		.	.	.	.	.	.	.	.	S	S	G	G	G	S	T	T	G	G	G	T
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.									.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.						.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																													.	.	.	.	.
Query SS confidence																													.	.	.	.	.
Query Sequence		S	E	L	L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T	.	.	.	.	.	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S	R	S	L	A	T	L	A	E	D
Query Conservation																													.	.	.	.	.
Alig confidence																													.	.	.	.	.
Template Conservation
Template Sequence		F	S	K	Y	A	G	F	T	G	V	R	L	G	W	T	V	V	P	K	A	L	K	Y	A	N	G	E	P	V	H	A	D	W	N	R	V	M	T	T	C	F	N	G	A	S	N	I	V	Q	A	G	G	L	A	C	L	Q	P	E	G	L	K	E	M	N	A	M	I	K	F	Y	K	E	N	A	Q	I	L	K	T
Template Known Secondary structure			S	G	G	G	T		T	T										T	T		B		T	T	S		B												S																T	S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		A	L	A	K	R	P	G	F	R	S	F	R	C	Q	D	S	S	L	L	A	F	D	F	A	G	V	H	H	S	D	M	V	T	L	.	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	T	L	R	A	S	F	A	P	Y	N	T	K	S	D	V	D	A	L	V
Query Conservation																																				.
Alig confidence							.																													.																		.	.	.	.	.	.											.	.
Template Conservation							.																																															.	.	.	.	.	.											.	.
Template Sequence		T	F	T	E	M	.	G	F	S	V	Y	G	G	D	D	A	P	Y	I	W	V	G	F	P	G	K	P	S	W	D	V	F	A	E	I	L	E	R	C	N	I	V	T	T	P	G	S	G	Y	G	P	A	.	.	.	.	.	.	G	E	G	F	V	R	A	S	A	F	.	.	G	S	R	E	N	I	L	E	A	V
Template Known Secondary structure						T	.	T						S	S	S	S	S							T	T	S																				G	G	G	G		G	G	.	.	.	.	.	.	G	T	T								.	.	S
Template Predicted Secondary structure							.																																															.	.	.	.	.	.											.	.
Template SS confidence
		360	.	.	.	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410							.	.	.	.	.	.	.	.	.	420			.	.	.	.	.	.	.	.	.	430
		390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	V	D	R	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	F	K	E	A	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		431	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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