Job Description Q46925 Confidence 99.87% Date Thu Jan 5 12:35:54 GMT 2012 Rank 203 Aligned Residues 327 % Identity 14% Template c3pj0D_ PDB info PDB header:lyase Chain: D: PDB Molecule:lmo0305 protein; PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution Resolution 1.80 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	D	D	K	T	I	V	W	T	R	G	T	T	E	S	I	N	M	V	A	Q	C	Y	A	R	P	R	L	Q	P	G	D
Query Conservation
Alig confidence																													.	.	.	.																		.	.	.																						.	.	.
Template Conservation																													.	.	.	.																		.	.	.																						.	.	.
Template Sequence		N	G	P	R	N	V	G	V	L	T	E	A	L	Q	N	I	D	D	N	L	E	S	D	I	Y	G	N	.	.	.	.	G	A	V	I	E	D	F	E	T	K	I	A	K	I	L	G	K	.	.	.	Q	S	A	V	F	F	P	S	G	T	X	A	Q	Q	I	A	L	R	I	W	A	.	.	.	D	R	K	E	N
Template Known Secondary structure		S	S			S								T	T	T	S		T	T					B	T	T	B	.	.	.	.	S															T		.	.	.	S						S															.	.	.				T
Template Predicted Secondary structure																													.	.	.	.																		.	.	.																						.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.					.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.				.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.				.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.
Query SS confidence																																																																						.	.	.
Query Sequence		E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	N	A	Q	R	L	P	D	V	D	L	L	P	E	L	I	T	P	R	S	R	I	L	A	L	G	Q	M	S	N	V	T	G	G	C	P	D	.	.	.	L	A	R	A	I	T	F	A	H
Query Conservation																																																																						.	.	.
Alig confidence																																	.																																					.	.	.
Template Conservation																																	.
Template Sequence		R	R	V	A	Y	H	P	L	S	H	L	E	I	H	E	Q	D	G	L	K	E	L	Q	Q	I	T	P	L	L	L	G	.	T	A	N	Q	L	L	T	I	D	D	I	K	S	L	R	E	P	V	S	S	V	L	I	E	L	P	Q	R	E	I	G	G	Q	L	P	A	F	E	E	L	E	K	I	S	E	Y	C	H
Template Known Secondary structure								T	T						S	S	T	T														S	.		T	T	S									T		S	S			S						S	S	B	G	G	G	T	S	B
Template Predicted Secondary structure																																	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.						.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																			.	.	.	.	.
Query SS confidence																			.	.	.	.	.
Query Sequence		S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	.	.	.	.	.	P	A	D	V	Q	Q	L	D	I	D	F	Y	A	F	S	G	H	K	L	Y	G	P	T	G	I	G	V	L	Y	G	K	S	E	L	L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T
Query Conservation																			.	.	.	.	.
Alig confidence																			.	.	.	.	.																				.																																		.	.	.	.	.
Template Conservation																																											.																																		.	.	.	.	.
Template Sequence		E	Q	G	I	S	L	H	L	D	G	A	R	L	W	E	I	T	P	F	Y	Q	K	S	A	E	E	I	C	A	L	F	D	S	V	Y	V	S	F	Y	G	I	.	G	G	I	A	G	A	I	L	A	G	N	D	D	F	V	Q	E	A	K	I	W	K	R	R	Y	G	G	D	L	I	S	L	Y	.	.	.	.	.
Template Known Secondary structure				T								T	T		G	G	G					T								T	T		S										.			S	S																					T	T				S				.	.	.	.	.
Template Predicted Secondary structure																																											.																																		.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.				.	.
Predicted Secondary structure																																																													.																.	.	.
Query SS confidence																																																													.																.	.	.
Query Sequence		Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S	R	S	L	A	T	L	A	E	D	A	L	A	K	R	P	G	F	R	S	F	.	R	C	Q	D	S	S	L	L	A	F	D	F	A	G	V	.	.	.	H	H
Query Conservation																																																													.																.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.																.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	I	L	S	A	D	Y	Y	F	E	K	R	I	G	K	X	A	E	Y	F	E	A	A	K	G	L	A	E	R	F	N	S	C	S	G	V	K	T	V	P	E	V	P	V	S	N	X	F	H	V	Y	F	E	N	S	A	D	E	I	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														G	G	G																	T	S	T	T					S	S	S		S	S	S							S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																					243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	T	L	R	A	S	F	A	P	Y	N	T	K	S	D	V	D	A	L	V	N	A	V	D	R	A	L	E	L	L
Query Conservation
Alig confidence																									.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.
Template Sequence		A	I	L	T	K	I	Q	D	E	T	G	V	G	I	S	G	Y	L	Q	E	K	S	A	.	.	.	.	.	.	D	V	C	A	F	E	V	S	V	G	D	A	F	A	E	I	P	A	K	N	L	E	L	V	F	R	C	L	E	K	E	L
Template Known Secondary structure																	S							T	.	.	.	.	.	.	T								B		G	G	G	G	G	S
Template Predicted Secondary structure																									.	.	.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.							.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions