Job Description Q46925 Confidence 99.91% Date Thu Jan 5 12:35:54 GMT 2012 Rank 169 Aligned Residues 353 % Identity 16% Template c3mebB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia Resolution 1.90 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.								.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.
Query Sequence		V	Y	L	D	S	A	A	T	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	.	.	.	.	.	.	.	N	A	P	D	D	K	T	I	V	W	T	R	G	T	T	E	S
Query Conservation																																																										.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.
Template Sequence		A	Y	R	D	E	S	G	K	P	W	I	L	P	A	V	K	E	A	E	A	I	I	S	S	D	L	S	K	Y	N	K	E	Y	P	P	V	A	G	F	.	.	.	.	.	.	P	L	F	L	E	A	A	Q	F	L	M	F	G	K	D	S	K	A	A	Q	E	G	R	I	A	S	C	Q	S	L	S	G	T	G	S
Template Known Secondary structure						T	T	S																	S		T	T	T	S			S				T	T			.	.	.	.	.	.														T	T						T	T								S
Template Predicted Secondary structure																																									.	.	.	.	.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.							.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.				.	.	.	.	.
Predicted Secondary structure																																																		.	.	.																						.	.	.
Query SS confidence																																																		.	.	.																						.	.	.
Query Sequence		I	N	M	V	A	Q	C	Y	A	R	P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	.	.	.	L	N	A	Q	R	L	P	D	V	D	L	L	P	E	L	I	T	P	R	S	R	.	.	.	I	L	A	L	G
Query Conservation																																																		.	.	.																						.	.	.
Alig confidence											.	.																																						.	.	.																						.	.	.
Template Conservation											.	.
Template Sequence		L	H	I	G	F	E	F	L	H	.	.	L	W	M	P	K	A	E	F	Y	M	P	S	T	T	W	P	N	H	Y	G	I	Y	D	K	V	F	N	K	L	K	V	P	Y	K	E	Y	T	Y	L	R	K	D	G	E	L	E	I	D	F	S	N	T	K	K	D	I	Q	S	A	P	E	K	S	I	F	L	F	H	A
Template Known Secondary structure											.	.				T	T							S	S			T												T	T	T	S								B		T	T	S		S	S	B												S		T	T							S
Template Predicted Secondary structure											.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.											.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.
Predicted Secondary structure													.	.	.																														.	.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence													.	.	.																														.	.	.	.	.	.	.	.	.	.																						.	.
Query Sequence		Q	M	S	N	V	T	G	G	C	P	D	.	.	.	L	A	R	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	P	A	D	.	.	.	.	.	.	.	.	.	.	V	Q	Q	L	D	I	D	F	Y	A	F	S	G	H	K	L	Y	G	P	T	G	.	.	I	G	V	L
Query Conservation													.	.	.																														.	.	.	.	.	.	.	.	.	.																						.	.
Alig confidence													.	.	.																														.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence		C	A	H	N	P	S	G	I	D	F	T	E	A	Q	W	K	E	L	L	P	I	M	K	E	K	K	H	I	A	F	F	D	S	A	Y	Q	G	F	A	T	G	S	F	E	A	D	A	F	A	V	R	M	F	V	D	A	G	V	E	V	L	V	A	Q	S	F	S	K	N	F	G	L	Y	G	E	R	I	G	C	L
Template Known Secondary structure		S	S		T	T	T																				T								S		T	T	T	S	S	S						T										T										T	T	T	S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	K	S	E	L	L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S	R	S	L	A	T	L	A	E	D	A	L
Query Conservation
Alig confidence																																																														.
Template Conservation																																																														.
Template Sequence		H	V	V	H	A	G	V	E	G	S	V	E	K	N	K	A	L	S	A	A	M	V	S	G	M	T	L	Q	I	R	K	T	W	S	M	S	A	I	H	G	A	Y	I	V	Q	V	I	V	H	D	K	R	L	L	Q	M	F	Y	D	N	.	V	K	E	M	S	A	R	I	H	R	M	R	S	L	L	H	A	S	L
Template Known Secondary structure							S		S	S	S																					T	T	T	S	S														T	S											.
Template Predicted Secondary structure																																																														.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330							.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.
Query Sequence		A	K	R	P	G	F	R	S	F	R	C	Q	D	S	S	L	L	A	.	.	.	.	.	.	F	D	F	A	G	V	H	H	S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	T	L	R	A	S	F	A	P	Y	N	T	K	S	D	V	D
Query Conservation																				.	.	.	.	.	.
Alig confidence					.															.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation					.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Sequence		A	K	R	.	K	T	P	G	P	G	S	K	G	T	W	D	H	I	L	T	A	I	G	M	F	T	F	T	G	L	T	P	E	H	V	D	Y	L	K	E	K	W	S	I	Y	L	V	K	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	M	S	M	C	.	G	L	T	E	S	N	C	D
Template Known Secondary structure				T	.	T				S	T	T	T	T			T							S	S																							B	T	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G				G	G	.	G			T	T	T
Template Predicted Secondary structure					.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template SS confidence
		348	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.																.	.	.	400	.	.		.	.	.	.	.	.	.	410
		387	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	V	N	A	V	D	R	A	L	E	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	V	A	E	A	I	H	D	A	V	T	K	L
Template Known Secondary structure														S
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions