Job Description Q46925 Confidence 100.00% Date Thu Jan 5 12:35:54 GMT 2012 Rank 29 Aligned Residues 347 % Identity 19% Template c3mafB_ PDB info PDB header:lyase Chain: B: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of stspl (asymmetric form) Resolution 2.97 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																																										.	.	.																				.	.
Query SS confidence																																																										.	.	.																				.	.
Query Sequence		A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	D	D	K	T	I	.	.	.	V	W	T	R	G	T	T	E	S	I	N	M	V	A	Q	C	Y	A	R	.	.
Query Conservation																																																										.	.	.																				.	.
Alig confidence																																																										.	.	.																				.	.
Template Conservation
Template Sequence		G	A	V	Y	D	E	H	H	I	A	F	L	N	E	V	Y	A	L	Q	S	Q	S	N	P	L	H	P	D	L	W	P	S	T	A	K	F	E	A	E	V	V	A	M	T	A	H	M	L	G	G	D	A	A	G	G	T	V	C	G	T	V	T	S	G	G	T	E	S	L	L	L	A	M	K	T	Y	R	D	W	A
Template Known Secondary structure																					T	T			T	T		T	T	T																			T	T	T	T	T	T	T	S								S	S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
				104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	N	A	Q	R	L	P	D	V	D	L	L	P	E	L	I	T	P	R	S	R	I	L	A	L	G	Q	M	S	N	V	T	G	G	C	P	D	L	A	R
Query Conservation		.	.
Alig confidence		.	.																									.	.	.	.
Template Conservation																												.	.	.	.
Template Sequence		R	A	T	K	G	I	T	A	P	E	A	V	V	P	V	S	A	H	A	A	F	D	K	A	A	Q	.	.	.	.	Y	F	G	I	K	L	V	R	T	P	L	D	A	D	Y	R	A	D	V	A	A	M	R	E	A	I	T	P	N	T	V	V	V	A	G	S	A	P	G	Y	P	H	G	V	V	D	P	I	P	E
Template Known Secondary structure								S	S							T	T	S		T								.	.	.	.			T								B		T	T	S	S	B											T	T								T	T		T	T	T
Template Predicted Secondary structure																												.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.					210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.												.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.																				.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.																				.
Query Sequence		A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	P	.	.	.	.	.	.	.	.	.	.	.	A	D	V	Q	Q	L	D	I	D	F	Y	A	F	S	G	H	K	L	Y	.	G	P	T	G	I	G	V	L	Y	G	K	S	E	L	L	E	A	M	S	P	W	L	G	G	G
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.																				.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation
Template Sequence		I	A	A	L	A	A	E	H	G	I	G	C	H	V	D	A	C	L	G	G	F	I	L	P	W	A	E	R	L	G	Y	P	V	P	P	F	D	F	R	L	E	G	V	T	S	V	S	A	D	T	H	K	Y	G	Y	G	A	K	G	T	S	V	I	L	Y	R	R	P	D	L	L	H	Y	Q	Y	F	I	A	A	D
Template Known Secondary structure										T								T	T	T	T	T	T						T	T	T							S	T	T	S	T	T								T	T	T	T	T				S	S							S	S												S	S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S	R	S	L	A	T	L	A	E	D	A	L	A	K	R	P	G	F	R	S	F	R	C	Q	D	S	S	L	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																																				.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																																																				.
Template Sequence		.	.	.	.	.	.	.	.	.	.	W	P	G	G	L	Y	F	S	P	T	F	A	G	S	R	P	G	A	L	S	A	T	A	W	A	A	M	L	S	L	G	E	E	G	Y	L	D	A	T	R	R	I	L	Q	A	A	D	R	L	K	A	G	V	R	A	I	P	S	L	K	I	L	G	D	P	L	W	.	V	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.		T	T						S	S	S		S	S																																									T	S	T	T				S	S			S	S	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																																				.
Template SS confidence
												340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380		.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		A	F	D	F	A	G	V	H	H	S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	T	L	R	A	S	F	A	P	Y	N	.	T	K	S	D	V	D	A	L	V	N	A	V	D	R	A	L	E	L	L	V	D
Query Conservation																																																					.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	A	S	D	E	L	N	I	Y	Q	V	M	E	E	M	A	G	R	G	W	R	L	N	G	.	.	.	.	.	.	.	.	.	.	.	L	H	R	P	P	A	F	H	V	A	L	T	L	R	H	T	E	P	G	V	V	D	R	F	L	A	D	L	Q	D	A	V	A	Q	V	R	A
Template Known Secondary structure						S	S	S												T	T						.	.	.	.	.	.	.	.	.	.	.		T	T	T	T								G	G	G	S	S	T	T																		T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.												.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions