Job Description Q46925 Confidence 99.90% Date Thu Jan 5 12:35:54 GMT 2012 Rank 183 Aligned Residues 345 % Identity 12% Template c3lv2A_ PDB info PDB header:transferase Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis 7,8-diaminopelargonic2 acid synthase in complex with substrate analog sinefungin Resolution 2.18 Å

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		17	.	.	20	.	.	.	.							.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure										.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.
Query Sequence		Q	D	A	G	V	Y	L	D	.	.	.	.	.	.	S	A	A	T	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	D	D	K	T	I	V	W	T	R	G	T
Query Conservation										.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.																																.	.	.	.	.	.																				.
Template Conservation																																															.	.	.	.	.	.																				.
Template Sequence		G	Q	P	I	E	V	L	D	A	M	S	S	W	W	T	A	I	H	G	H	G	H	P	A	L	D	Q	A	L	T	T	Q	L	R	V	M	N	H	V	M	F	G	G	L	T	.	.	.	.	.	.	H	E	P	A	A	R	L	A	K	L	L	V	D	I	T	P	A	G	L	.	D	T	V	F	F	S	D	S	G
Template Known Secondary structure		T								T	T					T		T	T		B	S																S				S	S	S			.	.	.	.	.	.															S	S	T	T		.							S	S
Template Predicted Secondary structure																																															.	.	.	.	.	.																				.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.					.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.													.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure															.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	E	S	I	N	M	V	A	Q	C	Y	A	R	.	.	.	.	P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	.	.	.	.	.	.	.	.	.	.	.	.	V	V	K	L	P	L	N	A	Q	R	L	P	D	V	D	L	L	P
Query Conservation															.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	V	S	V	E	V	A	A	K	M	A	L	Q	Y	W	R	G	R	G	L	P	G	K	R	R	L	M	T	W	R	G	G	Y	H	G	D	T	F	L	A	M	S	I	C	D	P	H	G	G	M	H	S	L	W	T	D	V	L	A	A	Q	V	F	A	P	Q	V	P	R	D	Y	D	P	A	Y	S	A	A	F	E
Template Known Secondary structure																		T	T	T		T	T								T	T					S	S					T	T	S		T	T	T	T	T	G	G	G	T		S	S	S											S	S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		155	.	.	.				.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.						.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure						.	.	.											.											.	.	.	.																										.	.	.	.	.
Query SS confidence						.	.	.											.											.	.	.	.																										.	.	.	.	.
Query Sequence		E	L	I	T	.	.	.	P	R	S	R	I	L	A	L	G	Q	.	M	S	N	V	T	G	G	C	P	D	.	.	.	.	L	A	R	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	.	.	.	.	.	F	P	A	D	V	Q	Q	L	D	I	D	F	Y	A	F	S	G	H
Query Conservation						.	.	.											.											.	.	.	.																										.	.	.	.	.
Alig confidence						.	.	.											.											.	.	.	.																										.	.	.	.	.
Template Conservation
Template Sequence		A	Q	L	A	Q	H	A	G	E	L	A	A	V	V	V	E	P	V	V	Q	G	A	G	G	M	R	F	H	D	P	R	Y	L	H	D	L	R	D	I	C	R	R	Y	E	V	L	L	I	F	D	E	I	A	T	G	F	G	R	T	G	A	L	F	A	A	D	H	A	G	V	S	P	D	I	M	C	V	G	K	A
Template Known Secondary structure								G	G	G								S	S				T	T	T						T													T	T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	T	T				S						G	G
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	Y	G	P	T	G	I	G	V	L	Y	G	K	S	E	L	L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	G	G	Y	L	S	L	A	A	T	L	C	T	A	D	V	A	H	T	I	S	A	G	A	A	L	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	P	T	F	M	A	N	P	L	A	C	A	V	S	V	A	S	V	E	L	L	L	G	Q	D	W	R	T	R	I	T	E	L
Template Known Secondary structure		G	G	T	T	S	S																		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S			T	T	T	T																	T	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.																			.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	L	A	T	L	A	E	D	A	L	A	K	R	P	G	F	R	S	F	R	C	Q	D	S	S	L	L	A	F	D	F	A	G	V	H	H	S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	T	L	R	A	S	F	A	P	Y	N	T
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	G	L	T	A	G	L	D	T	A	R	A	L	P	A	V	T	D	V	R	V	C	G	A	I	G	V	I	E	C	D	R	P	V	D	L	A	V	A	T	P	A	A	L	D	R	G	V	W	L	R	P	F	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	Y	A	M	P	P	Y	I	C	T
Template Known Secondary structure										G	G	G	G	G	S	T	T								S	S							S	S													T	T	T						B	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.														.	.	.	.	.	410	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	D	V	D	A	L	V	N	A	V	D	R	A	L	E	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	A	E	I	T	Q	I	T	S	A	M	V	E	V	A	R	L	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions