Job Description Q46925 Confidence 99.96% Date Thu Jan 5 12:35:54 GMT 2012 Rank 69 Aligned Residues 334 % Identity 13% Template c3kaxB_ PDB info PDB header:lyase Chain: B: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis Resolution 1.70 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.						80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure															.																																																			.	.	.	.	.
Query SS confidence															.																																																			.	.	.	.	.
Query Sequence		Q	D	A	G	V	Y	L	D	S	A	A	T	A	.	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	.	.	.	.	.	D	D	K	T	I	V	W	T	R	G	T
Query Conservation															.																																																			.	.	.	.	.
Alig confidence															.																												.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	E	E	L	I	H	A	W	I	A	D	X	D	F	E	V	P	Q	P	I	Q	T	A	L	K	K	R	I	E	H	P	I	F	G	Y	T	L	P	P	E	N	.	.	.	.	.	.	.	.	.	.	.	I	G	D	I	I	C	N	W	T	K	K	Q	Y	N	W	D	I	Q	K	E	W	I	V	F	S	A	G	I
Template Known Secondary structure		T	S								S	S		S	S															T	S										T	T	.	.	.	.	.	.	.	.	.	.	.																			G	G	G					S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.												.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.				.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		T	E	S	I	N	M	V	A	Q	C	Y	A	R	P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	N	A	Q	R	L	.	.	.	P	D	V	D	L	L	P	E	L	I	T	P	R	S	R	I	L	A	L	G
Query Conservation																																																											.	.	.
Alig confidence													.	.	.	.																							.	.	.	.																	.	.	.
Template Conservation													.	.	.	.																							.	.	.	.
Template Sequence		V	P	A	L	S	T	S	I	Q	A	F	.	.	.	.	T	K	E	N	E	S	V	L	V	Q	P	P	I	Y	P	P	F	F	E	X	V	T	.	.	.	.	T	N	N	R	Q	L	C	V	S	P	L	Q	K	Q	N	D	T	Y	A	I	D	F	E	H	L	E	K	Q	F	Q	Q	G	V	K	L	X	L	L	C
Template Known Secondary structure													.	.	.	.			T	T							S	S											.	.	.	.		T	T									B		S	S	S	S		B												T	T
Template Predicted Secondary structure													.	.	.	.																							.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.					.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.					.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		168	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.										.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.
Predicted Secondary structure													.	.	.																																				.	.	.	.	.	.	.	.	.																.	.
Query SS confidence													.	.	.																																				.	.	.	.	.	.	.	.	.																.	.
Query Sequence		Q	M	S	N	V	T	G	G	C	P	D	.	.	.	L	A	R	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	P	A	D	V	Q	Q	L	D	I	.	.	.	.	.	.	.	.	.	D	F	Y	A	F	S	G	H	K	L	Y	G	P	T	G	.	.	I	G	V	L	Y
Query Conservation													.	.	.																																				.	.	.	.	.	.	.	.	.																.	.
Alig confidence													.	.	.																																				.	.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		S	P	H	N	P	I	G	R	V	W	K	K	E	E	L	T	K	L	G	S	L	C	T	K	Y	N	V	I	V	V	A	D	E	I	H	S	D	I	I	Y	A	D	H	T	H	T	P	F	A	S	L	S	E	E	L	A	A	R	T	I	T	C	X	A	P	S	K	T	F	N	I	A	G	L	Q	A	S	I	I	I
Template Known Secondary structure		S	S	B	T	T	T	T	B																	T	T								T	T	T	T		B		T	T						G	G	G	S						T	T							S	S	T	G	G	G		G	G	G
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	S	E	L	L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S	R	S	L	A	T	L	A	E	D	A	L	A
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	P	N	E	K	L	R	Q	A	F	T	S	I	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	Q	G	F	H	G	L	N	I	F	A	Y	T	A	X	Q	S	A	Y	T	E	C	N	D	W	L	N	E	I	R	F	Y	I	E	D	N	A	K	F	A	C	E	Y	I	K	D
Template Known Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T																T	T	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.																				.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																							.	.															.
Query SS confidence																							.	.															.
Query Sequence		K	R	P	G	F	R	S	F	R	C	Q	D	S	S	L	L	A	F	D	F	A	.	.	G	V	H	H	S	D	M	V	T	L	L	A	E	Y	.	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	T	L	R	A	S	F	A	P	Y	N	T	K	S	D	V	D	A	L	V	N
Query Conservation																							.	.															.
Alig confidence																							.	.															.														.	.	.	.	.	.											.	.
Template Conservation																																																					.	.	.	.	.	.											.	.
Template Sequence		H	I	P	T	L	S	V	X	K	P	E	G	S	F	L	L	W	I	D	C	S	A	L	N	L	S	Q	D	E	R	T	K	L	L	E	E	K	G	K	I	I	V	E	P	G	E	K	Y	G	L	G	.	.	.	.	.	.	G	E	E	H	I	G	I	N	I	G	.	.	C	P	R	S	V	L	E	E	I	L	N
Template Known Secondary structure				T	T							S	B	S	S							G	G	G															S							S	G	G	G		T	T	.	.	.	.	.	.	T	T	T							S	.	.	S
Template Predicted Secondary structure																																																					.	.	.	.	.	.											.	.
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.							.	.	.	.	360	.	.	.	.	.			.	.	.	.	370	.	.	.	.	.	.
		391	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	D	R	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	R	H	T	F
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions