Job Description Q46925 Confidence 99.86% Date Thu Jan 5 12:35:54 GMT 2012 Rank 206 Aligned Residues 327 % Identity 13% Template c3k7yA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: aspartate aminotransferase of plasmodium falciparum Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.						80	.	.	.	.			.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.						.	.
Query SS confidence																																																													.	.	.	.	.						.	.
Query Sequence		V	Y	L	D	S	A	A	T	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	.	.	.	.	.	D	D	K	T	I	.	.	V	W	T	R	G	T	T	E	S
Query Conservation																																																													.	.	.	.	.						.	.
Alig confidence																																							.	.	.	.	.	.	.	.															.	.	.	.	.						.	.
Template Conservation																																							.	.	.	.	.	.	.	.
Template Sequence		V	C	C	N	D	D	G	D	L	H	I	F	D	S	V	L	N	A	D	K	L	V	T	E	N	Y	K	E	K	P	Y	L	L	G	N	G	T	.	.	.	.	.	.	.	.	E	D	F	S	T	L	T	Q	N	L	I	F	G	N	N	S	K	Y	I	E	D	K	K	I	C	T	I	Q	C	I	G	G	T	G	A
Template Known Secondary structure		S		B		T	T	S	S	B																								T	T	S	S		.	.	.	.	.	.	.	.														S	S		T	T	T	T	T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.									.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.																.	.	.
Query SS confidence																																																			.	.																.	.	.
Query Sequence		I	N	M	V	A	Q	C	Y	A	R	P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	.	.	N	A	Q	R	L	P	D	V	D	L	L	P	E	L	I	.	.	.	T	P	R	S	R	I	L	A	L	G	Q
Query Conservation																																																			.	.																.	.	.
Alig confidence											.	.	.																							.	.	.	.												.	.																.	.	.
Template Conservation											.	.	.																							.	.	.	.
Template Sequence		I	F	V	L	L	E	F	L	K	.	.	.	M	L	N	V	E	T	L	Y	V	T	N	P	P	Y	I	N	H	V	N	M	I	E	.	.	.	.	S	R	G	F	N	L	K	Y	I	N	F	F	D	Y	N	L	I	D	I	N	Y	D	L	F	L	N	D	L	R	N	I	P	N	G	S	S	V	I	L	Q	I	S
Template Known Secondary structure											.	.	.	T	T	T								S	S											.	.	.	.	T	T	T											T	T	T	T														S		S	S								S
Template Predicted Secondary structure											.	.	.																							.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140					.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		169	170	.	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.											.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.
Predicted Secondary structure											.	.	.																															.	.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence											.	.	.																															.	.	.	.	.	.	.	.	.	.																						.	.
Query Sequence		M	S	N	V	T	G	G	C	P	.	.	.	D	L	A	R	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	P	A	D	.	.	.	.	.	.	.	.	.	.	V	Q	Q	L	D	I	D	F	Y	A	F	S	G	H	K	L	Y	G	P	T	G	.	.	I	G	V	L	Y
Query Conservation											.	.	.																															.	.	.	.	.	.	.	.	.	.																						.	.
Alig confidence											.	.	.																															.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence		C	Y	N	P	C	S	V	N	I	E	E	K	Y	F	D	E	I	I	E	I	V	L	H	K	K	H	V	I	I	F	D	I	A	Y	Q	G	F	G	H	T	N	L	E	E	D	V	L	L	I	R	K	F	E	E	K	N	I	A	F	S	V	C	Q	S	F	S	K	N	M	S	L	Y	G	E	R	A	G	A	L	H
Template Known Secondary structure		S		T	T	T																												S		T	T	T	S	S	S	S	T	T	G	G	G								T	T	T										T	T	T	S			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		234	.								.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.
Query Sequence		G	K	.	.	.	.	.	.	.	S	E	L	L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S	R	S	L	A	T
Query Conservation				.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	C	K	N	Q	E	E	K	K	I	V	F	N	N	L	C	F	I	V	R	K	F	Y	S	S	P	V	I	H	T	N	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	Q	L	L	N	N	Q	N	L	K	L	N	W	I	K	E	L	S	Q	L	S	Q	R	I	T	N	N	R	I
Template Known Secondary structure					S	S																	T	T	T	S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.																	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.								.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.
Query Sequence		L	A	E	D	A	L	A	K	R	P	.	.	.	.	.	.	.	G	F	R	S	F	R	C	Q	D	S	S	L	L	A	F	D	F	A	G	V	H	H	S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	T	L	R	A	S	F	A	P	Y
Query Conservation												.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.																				.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation																																						.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Sequence		L	F	F	N	K	L	E	T	Y	Q	K	K	Y	N	L	N	Y	D	W	N	V	Y	K	K	Q	R	G	L	F	S	F	V	P	L	L	A	.	.	.	.	K	I	A	E	H	L	K	T	H	H	I	Y	I	I	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	I	N	V	S	.	G
Template Known Secondary structure											G	G	G	G	T					G	G	G	G	S	S			S	S					G	G	G	G	.	.	.	.	G	G	T	T	T	T	T	T	T	T					T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S				G	G	.	G
Template Predicted Secondary structure																																						.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.					.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.																	.	380	.	.	.	.		.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	K	S	D	V	D	A	L	V	N	A	V	D	R	A	L	E	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	K	N	N	V	D	Y	I	A	D	K	I	C	L	S	L	S	Q	I
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions