Phyre 2 alignment of Q46925 with c3ju7B

Job Description Q46925
Confidence 99.95% Date Thu Jan 5 12:35:54 GMT 2012

Rank 98 Aligned Residues 338

% Identity 9% Template c3ju7B_

PDB info PDB header:transferase Chain: B: PDB Molecule:putative plp-dependent aminotransferase; PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution

Resolution 2.19 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	A	A	T	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	D	D	K	T	I	V	W	T	R	G	T	T	E	S	I	N	M	V	A	Q	C	Y	A	R	P
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.																				.																					.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.																				.																					.	.	.
Template Sequence	L	R	A	S	T	V	P	V	I	E	Y	L	D	E	L	K	E	I	D	A	S	H	I	Y	T	N	Y	.	.	.	.	.	.	.	.	.	.	G	P	I	N	Q	R	F	E	Q	T	I	X	S	G	F	F	Q	N	R	.	G	A	V	T	T	V	A	N	A	T	L	G	L	X	A	A	I	Q	L	K	.	.	.
Template Known Secondary structure								G	G	G	T											T			S	S	S	.	.	.	.	.	.	.	.	.	.															T	S	T	T		.	S						S														.	.	.
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.																				.																					.	.	.
Template SS confidence
	7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.											.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.

	105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	N	.	A	Q	R	L	P	D	V	D	L	L	P	E	L	I	T	P	R	S	R	I	L	A	L	G	Q	M	S	N	V	T	G	G	C	P	D	L	A	R	A	I
Query Conservation																																								.
Alig confidence																								.	.	.	.													.
Template Conservation																								.	.	.	.
Template Sequence	K	R	K	K	G	K	Y	A	L	X	P	S	F	T	F	P	A	T	P	L	A	A	I	.	.	.	.	W	C	G	L	E	P	Y	F	I	D	I	S	I	D	D	W	Y	X	D	K	T	V	L	W	D	K	I	E	E	L	K	E	E	V	A	I	V	V	P	Y	A	T	F	G	S	W	X	N	L	E	E	Y	E
Template Known Secondary structure	S		T	T								S	S	S		T								.	.	.	.		T	T								B		T	T	T		S	B													G	G	G							B		T	T	T	B
Template Predicted Secondary structure																								.	.	.	.
Template SS confidence
	73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.					.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.

	184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	.	.	.	P	A	D	V	Q	Q	L	D	I	D	F	Y	A	F	S	G	H	K	L	Y	G	P	T	G	I	G	V	L	Y	G	K	S	E	L	L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F
Query Conservation																						.	.	.
Alig confidence																						.	.	.
Template Conservation
Template Sequence	E	L	E	K	K	G	V	P	V	V	V	D	A	A	P	G	F	G	L	X	N	G	G	X	H	Y	G	Q	D	F	S	G	X	I	I	Y	S	F	H	A	T	P	F	G	I	G	E	G	G	L	I	Y	S	K	N	E	E	D	I	Q	R	I	K	R	X	G	N	F	G	F	D	T	N	R	E	C	T	X	X	G
Template Known Secondary structure						T			B					T	T		T	T				T	T			T	T	T	T		S	S							B							B	S							S												T	B	T	T	B		T	T	S		B		S
Template Predicted Secondary structure
Template SS confidence
	149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

	261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.								.	.	.	.	330	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.
Query Sequence	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S	R	S	L	A	T	L	A	E	D	A	L	A	K	R	P	G	F	R	S	F	R	C	Q	D	.	.	.	.	.	.	.	S	S	L	L	A	F	D	F
Query Conservation																																																																		.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	F	N	C	K	X	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	Y	A	A	A	I	G	I	A	T	X	K	K	W	D	D	K	L	K	E	R	T	R	I	S	E	W	Y	K	Q	L	L	Q	S	N	G	L	X	K	K	G	W	Q	L	Q	K	T	E	A	V	I	Q	Q	F	X	P	I	L	C	P
Template Known Secondary structure		B				.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				T	T	T	T	T	T	T		B					S		B			S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	230	.	.	.	.															.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

	334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.														.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	G	V	H	H	S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	T	L	R	A	S	F	A	P	Y	N	T	K	S	D	V	D	A	L	V	N	A	V	D	R
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	E	E	V	R	N	K	Q	V	I	E	D	L	K	K	Q	K	I	E	A	R	L	Y	F	S	P	S	C	H	Q	Q	V	L	F	R	N	Y	K	S	T	D	L	T	R	T	N	K	I	A	K	R	I	V	S	L	P	L	W	E	G	X	T	K	E	I	V	E	Q	I	V	I	C	L	G	Q
Template Known Secondary structure	T	T	S												T	T	B			B		T	T	S	S		G	G	G	S	G	G	G	T	T	S		B	S																			T	T
Template Predicted Secondary structure
Template SS confidence
	296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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