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Job DescriptionQ46925
Confidence99.95%DateThu Jan 5 12:35:54 GMT 2012
Rank105Aligned Residues366
% Identity14%Templatec3ihjA_
PDB info PDB header:transferaseChain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50.........60..... ....70...... ... 80.........
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Query Sequence  LDSAATALKPEAVVEATQQFYSLSAGNVHRSQFAEAQRLTARY. . . . . . . EAAREKVAQLL. . . . . NAP. DDKTIVWTRG
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Template Sequence  FTEVIRANPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRILQACSQGVNCIREDVAAYITRRDGGVPADPDNIYLTTG
Template Known Secondary structure  SSS
B





GGGGG
SSS



S
TTT



GGGSS
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   87..90.........100.........110.........120.........130.........140.........150.........160......
 
   90.........100.........110.........120.........130.........140...... ...150........ .160..
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Query Sequence  TTESINMVAQCYARPRLQPGDEIIVSVAEHHANLVPWLMVAQQTGAKVVKLPLNAQR. . LPDVDLLPELIT. . . . . PRSR
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Template Sequence  ASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVIS. . . . ELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPK
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GGGSS

T....TT

BGGGTTB

TTTS
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   187..190.........200.........210.........220.... .....230.........240.........250.........260..
 
   163......170.........180 .........190.........200.........210.........220.........230.........
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Query Sequence  ILALGQMSNVTGGCPDLA. . . RAITFAHSAGMVVMVDGAQGAVHFPADVQQLDIDFYAFSGHKLYGPTGIGVLYGKSELL
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Template Sequence  VLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKG
Template Known Secondary structure  SS
TTT




T

TTTT
B

TT




T
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   263......270.........280.........290.........300.........310.........320.........330.........340..
 
   240 .........250.........260.........270.........280.... .....290.........300.........310
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Query Sequence  E. AMSPWLGGGKMVHEVSFDGFTTQSAPWKLEAGTPNVAGVIGLSA. . . . . . . . ALEWLADYDINQAESWSRSLATLAED
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Template Sequence  YMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTED
Template Known Secondary structure  TT

SSS

S

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TTSTT
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   343......350.........360.........370.........380.........390.........400.........410.........420..
 
   311........320.........330... ......340..... ....350.........360.........370......
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Query Sequence  ALAKRPGFRSFRCQDSSLLAFDF. . . . . . . . . . . . . AGVHHSDMVTLL. AEYGIALRAGQHCAQPLLAELGVTGTLRASF
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Template Sequence  LFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQRE. . . . . GTYHFRMTI
Template Known Secondary structure  TSTT




BSS




TTS

B

GGGT


T.....T

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   423......430.........440.........450.........460.........470.........480........ .490.......
 
   377..380.........390.........
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Query Sequence  APYNTKSDVDALVNAVDRALELL
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Template Sequence  LP. . PVEKLKTVLQKVKDFHINF
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   498. 500.........510........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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