Job Description Q46925 Confidence 99.94% Date Thu Jan 5 12:35:54 GMT 2012 Rank 117 Aligned Residues 364 % Identity 13% Template c3if2B_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution Resolution 2.50 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.												.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.																											.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.																											.
Query Sequence		Q	D	A	G	V	Y	L	D	S	A	A	T	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	.	.	.	.	.	.	.	.	.	.	.	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	.	D	D	K	T	I
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.																											.
Alig confidence									.																														.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation									.
Template Sequence		D	Q	P	V	N	X	L	.	G	G	G	N	P	A	K	I	D	A	V	N	E	L	F	L	E	T	Y	K	A	L	G	N	D	N	D	T	G	K	A	N	S	S	A	I	I	S	X	A	N	Y	S	N	P	Q	G	D	S	A	F	I	D	A	L	V	G	F	F	N	R	H	Y	D	W	N	L	T	S	E	N	I
Template Known Secondary structure		S	S						.	S																									S		T	T		S										S				T	T																							G	G	G
Template Predicted Secondary structure									.
Template SS confidence
		30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.					.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.	150	.	.	.
Predicted Secondary structure																						.	.	.	.																							.	.																				.	.	.	.	.
Query SS confidence																						.	.	.	.																							.	.																				.	.	.	.	.
Query Sequence		V	W	T	R	G	T	T	E	S	I	N	M	V	A	Q	C	Y	A	R	P	.	.	.	.	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	.	.	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	N	A	Q	.	.	.	.	.	R	L	P	D	V	D	L	L
Query Conservation																						.	.	.	.																							.	.																				.	.	.	.	.
Alig confidence																						.	.	.	.																							.	.																				.	.	.	.	.
Template Conservation
Template Sequence		A	L	T	N	G	S	Q	N	A	F	F	Y	L	F	N	L	F	G	G	A	F	V	N	E	K	S	V	D	K	S	I	L	L	P	L	T	P	E	Y	I	G	Y	S	D	V	H	V	E	G	Q	H	F	A	A	V	L	P	H	I	D	E	V	T	H	D	G	E	E	G	F	F	K	Y	R	V	D	F	E	A	L
Template Known Secondary structure					S	S													S																S	S	S	S			G	G	G	T	T			S	S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		154	.	.	.	.				.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.						200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure							.	.	.																								.	.	.																			.	.	.	.	.
Query SS confidence							.	.	.																								.	.	.																			.	.	.	.	.
Query Sequence		P	E	L	I	T	.	.	.	P	R	S	R	I	L	A	L	G	Q	M	S	N	V	T	G	G	C	P	D	L	A	R	.	.	.	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	.	.	.	.	.	G	A	V	H	F	P	A	D	V	Q	Q	L	D	I	D	F	Y	A	F	S	G	H	K
Query Conservation							.	.	.																								.	.	.																			.	.	.	.	.
Alig confidence							.	.	.																								.	.	.																			.	.	.	.	.
Template Conservation
Template Sequence		E	N	L	P	A	L	K	E	G	R	I	G	A	I	C	C	S	R	P	T	N	P	T	G	N	V	L	T	D	E	E	X	A	H	L	A	E	I	A	K	R	Y	D	I	P	L	I	I	D	N	A	Y	G	X	P	F	P	N	I	I	Y	S	D	A	H	L	N	W	D	N	N	T	I	L	C	F	S	L	S	K
Template Known Secondary structure			T						T	T									S	S		T	T	T																			T	T								T	T		T	T	T	T			B		S								T	T							S	G	G
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		223	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		L	Y	.	G	P	T	G	I	G	V	L	Y	G	K	S	E	L	L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S
Query Conservation				.
Alig confidence				.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	G	L	P	G	X	R	T	G	I	I	V	A	D	A	K	V	I	E	A	V	S	A	X	N	A	V	V	N	L	A	P	T	R	F	G	A	A	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	L	V	A	N	D	R	I	K	Q	L	S	D	N	E	I	K	P	F	Y	Q	K	Q	A
Template Known Secondary structure		G	T		G	G	G																							T	S	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	S									T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.																.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.																																		.	.
Query SS confidence																																			.	.																																		.	.
Query Sequence		R	S	L	A	T	L	A	E	D	A	L	A	K	R	P	G	F	R	S	F	R	C	Q	D	S	S	L	L	A	F	D	F	A	.	.	G	V	H	H	S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	.	.	V	T	G	T	L	R	A	S	F	A
Query Conservation																																			.	.																																		.	.
Alig confidence																.																			.	.																																		.	.
Template Conservation																.
Template Sequence		T	L	A	V	K	L	L	K	Q	A	L	G	D	Y	.	P	L	X	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	S	T	L	D	L	Y	E	R	L	K	A	K	G	T	L	I	V	P	S	E	Y	F	F	P	G	V	D	V	S	D	Y	Q	H	A	H	E	C	I	R	X	S	I	A
Template Known Secondary structure												S	S	S	S	.	S								B	S	S							T	T		S	S												T	T						G	G	G	S		T	T	S			T	T		G	G	G	G	S						S
Template Predicted Secondary structure																.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	N	T	K	S	D	V	D	A	L	V	N	A	V	D	R	A	L	E	L	L
Query Conservation
Alig confidence			.	.
Template Conservation			.	.
Template Sequence		A	.	.	D	E	Q	T	L	I	D	G	I	K	V	I	G	E	V	V	R	E	L
Template Known Secondary structure		S	.	.
Template Predicted Secondary structure			.	.
Template SS confidence
		420			.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions