Job Description Q46925 Confidence 99.90% Date Thu Jan 5 12:35:54 GMT 2012 Rank 176 Aligned Residues 350 % Identity 14% Template c3ezsB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution Resolution 2.19 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.				.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		M	N	V	F	N	P	A	Q	F	R	A	Q	F	P	A	L	Q	D	A	G	V	Y	L	D	S	A	A	.	.	.	T	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N
Query Conservation																													.	.	.
Alig confidence																													.	.	.																													.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.
Template Sequence		F	E	P	Y	P	F	E	R	L	R	A	L	L	K	E	I	T	P	K	K	R	G	L	D	L	G	I	G	E	P	Q	F	E	T	P	K	F	I	Q	D	A	L	K	N	H	T	H	S	L	N	I	Y	P	K	S	A	F	E	.	.	.	.	.	.	E	S	L	R	A	A	Q	R	G	F	F	K	R	R	F	K
Template Known Secondary structure															T	T				S	S				B					S			S												T	T	G	G	G	G	G	S				T	T			.	.	.	.	.	.																S
Template Predicted Secondary structure																																																												.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60							.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		78	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		A	P	.	D	D	K	T	I	V	W	T	R	G	T	T	E	S	I	N	M	V	A	Q	C	Y	A	R	P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	N	A	Q	R	L	P	D	V	D	L	L	P	E	L
Query Conservation				.
Alig confidence				.																								.	.																								.	.	.	.																					.
Template Conservation																												.	.																								.	.	.	.																					.
Template Sequence		I	E	L	K	E	N	E	L	I	S	T	L	G	S	R	E	V	L	F	N	F	P	S	F	V	L	.	.	F	D	Y	Q	N	P	T	I	A	Y	P	N	P	F	Y	Q	I	Y	E	G	A	A	K	.	.	.	.	F	I	K	A	K	S	L	L	X	P	L	T	K	E	N	D	F	T	P	S	.	L	N	E	K
Template Known Secondary structure						G	G	G					S	S	S												T	.	.	T	T		S	S								S			T								.	.	.	.		T	T										G	G	G	T	T				.
Template Predicted Secondary structure																												.	.																								.	.	.	.																					.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.					.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.													210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																								.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	T	P	R	S	R	I	L	A	L	G	Q	M	S	N	V	T	G	G	C	P	D	.	.	.	L	A	R	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	P	A	D	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	D	I	D	F	Y	A	F	S	G	H
Query Conservation																								.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	Q	E	V	D	L	V	I	L	N	S	P	N	N	P	T	G	R	T	L	S	L	E	E	L	I	S	W	V	K	L	A	L	K	H	D	F	I	L	I	N	D	E	C	Y	S	E	I	Y	E	N	T	P	P	P	S	L	L	E	A	C	X	L	A	G	N	E	A	F	K	N	V	L	V	I	H	S	L	S
Template Known Secondary structure							S						S	S		T	T	T																			T	T								T	T	T	T		B	S	S	S												T	T		T	T		T	T							S
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		222	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		K	L	Y	G	P	T	G	.	.	I	G	V	L	Y	G	K	S	E	L	L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S
Query Conservation									.	.
Alig confidence									.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	R	S	S	A	P	G	L	R	S	G	F	I	A	G	D	S	R	L	L	E	K	Y	K	A	F	R	A	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	T	S	A	N	A	I	Q	K	A	S	E	A	A	W	L	D	D	R	H	A	E	F	F	R	N
Template Known Secondary structure					T		G	G	G																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.																								260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	S	R	S	L	A	T	L	A	E	D	A	L	A	K	R	P	G	F	R	S	F	R	C	Q	D	S	S	L	L	A	F	D	F	A	G	V	H	H	S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	T	L	R	A	S	F	A	P	Y
Query Conservation
Alig confidence																				.	.	.	.	.														.																										.	.	.	.													.	.
Template Conservation																				.	.	.	.	.														.																										.	.	.	.													.	.
Template Sequence		I	Y	A	N	N	L	K	L	A	R	K	I	F	K	N	T	L	I	.	.	.	.	.	Y	P	Y	S	F	Y	V	Y	L	P	V	Q	N	.	G	E	N	F	A	K	T	L	Y	Q	N	E	G	I	I	T	L	P	A	L	Y	L	G	R	N	.	.	.	.	R	I	G	A	D	Y	V	R	L	A	L	V	.	.
Template Known Secondary structure														S	T	T				.	.	.	.	.		S	B	S	S							S		.															B				G	G	G	G		S	T	.	.	.	.	T	T	T	T	T								.	.
Template Predicted Secondary structure																				.	.	.	.	.														.																										.	.	.	.													.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.						.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.					.	.	.	.	.	.	.	350	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	K	S	D	V	D	A	L	V	N	A	V	D	R	A	L	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	D	T	P	L	L	E	K	P	L	E	I	I	E	T	Y	R	E	N
Template Known Secondary structure		S																		T
Template Predicted Secondary structure
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions