Job Description Q46925 Confidence 99.92% Date Thu Jan 5 12:35:54 GMT 2012 Rank 159 Aligned Residues 342 % Identity 12% Template c3dodA_ PDB info PDB header:transferase Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 bacillus subtilis Resolution 1.90 Å

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		17	.	.	20	.	.	.	.							.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure										.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.
Query Sequence		Q	D	A	G	V	Y	L	D	.	.	.	.	.	.	S	A	A	T	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	D	D	K	T	I	V	W	T	R	G	T
Query Conservation										.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.																																.	.	.	.	.	.																				.
Template Conservation																																															.	.	.	.	.	.																				.
Template Sequence		I	N	G	K	E	Y	Y	D	G	F	S	S	V	W	L	N	V	H	G	H	R	K	K	E	L	D	D	A	I	K	K	Q	L	G	K	I	A	H	S	T	L	L	G	M	T	.	.	.	.	.	.	N	V	P	A	T	Q	L	A	E	T	L	I	D	I	S	P	K	K	L	.	T	R	V	F	Y	S	D	S	G
Template Known Secondary structure		T	T	S						T	T					T		S	S		B	S													T	T		S					S	S	S		.	.	.	.	.	.															S		T	T		.							S	S
Template Predicted Secondary structure																																															.	.	.	.	.	.																				.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.							.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.					.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		T	E	S	I	N	M	V	A	Q	C	Y	A	R	.	.	.	.	P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	N	A	Q	R	L	P	D	V	D	L	L	P	E	L	I	T	P	R	S	R	I	L	A	L
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.																							.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.
Template Sequence		A	E	A	M	E	I	A	L	K	M	A	F	Q	Y	W	K	N	I	G	K	P	E	K	Q	K	F	I	A	M	K	S	Y	K	A	P	I	P	Y	V	.	.	.	.	.	.	Y	R	S	E	S	G	D	P	D	E	C	R	D	Q	C	L	R	E	L	A	Q	L	L	E	E	H	H	E	E	I	A	A	L	S	I
Template Known Secondary structure																			T	T		T	T																		.	.	.	.	.	.	T	T	S	S	S																						G	G	G
Template Predicted Secondary structure																																									.	.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.							.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		167	.		.	170	.	.	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.						.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure				.											.	.	.	.																										.	.	.	.	.
Query SS confidence				.											.	.	.	.																										.	.	.	.	.
Query Sequence		G	Q	.	M	S	N	V	T	G	G	C	P	D	.	.	.	.	L	A	R	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	.	.	.	.	.	F	P	A	D	V	Q	Q	L	D	I	D	F	Y	A	F	S	G	H	K	L	Y	G	P	T	G	I	G	V	L	Y	G	K	S
Query Conservation				.											.	.	.	.																										.	.	.	.	.
Alig confidence				.											.	.	.	.																										.	.	.	.	.
Template Conservation
Template Sequence		E	S	M	V	Q	G	A	S	G	M	I	V	M	P	E	G	Y	L	A	G	V	R	E	L	C	T	T	Y	D	V	L	M	I	V	D	E	V	A	T	G	F	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	L	M	A	A	G	K	G	I	T	G	G	Y	L	P	I	A	V	T	F	A	T	E
Template Known Secondary structure			S	S			S	T	T	T						T	T												T	T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	G	T				S						G	G	G	G	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S	R	S	L	A	T	L	A	E	D	A	L	A	K	R	P
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	I	Y	K	A	F	Y	D	D	Y	E	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	F	F	H	G	H	S	Y	T	G	N	Q	L	G	C	A	V	A	L	E	N	L	A	L	F	E	S	E	N	I	V	E	Q	V	A	E	K	S	K	K	L	H	F	L	L	Q	D	L	H	A	L	P
Template Known Secondary structure						T	T		S		G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	T	T																		T	T																				T	T	S	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.															310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.													.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	R	S	F	R	C	Q	D	S	S	L	L	A	F	D	F	A	.	.	.	.	.	.	.	.	.	.	.	.	G	V	H	H	S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	T	L	R	A	S	F	A	P	Y	N	T	K	S	D
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.										.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	V	G	D	I	R	Q	L	.	G	F	M	C	G	A	E	L	V	R	S	K	E	T	K	E	P	Y	P	A	D	R	R	I	G	Y	K	V	S	L	K	M	R	E	L	G	M	L	T	R	P	L	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	A	F	L	P	P	L	A	S	T	A	E	E
Template Known Secondary structure		T								.	T	T								S	B	T	T	T	T	B				G	G	G													T	T							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure										.																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		363	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.														.	.	.	.	.	420	.	.	.	.	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	A	L	V	N	A	V	D	R	A	L	E	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	E	M	V	A	I	M	K	Q	A	I	H	E	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions