Return to main results Retrieve Phyre Job Id

Job DescriptionQ46925
Confidence100.00%DateThu Jan 5 12:35:54 GMT 2012
Rank3Aligned Residues377
% Identity25%Templatec3caiA_
PDB info PDB header:transferaseChain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  FNPAQFRAQFPALQDAGVYLDSAATALKPEAVVEATQQFYSLSAGNVHRSQFAEAQRLTARYEAAREKVAQLLNAPDDKT
Query Conservation        
  

 
    



          
  
    
                         
  

   
      
Alig confidence 














































.


























.



Template Conservation   
    
   
 
     


       
  
  
            .                 
  

   
 .    
Template Sequence  YDVARVRGLHPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRRSGAST. VGAHPSARRSAAVLDAAREAVADLVNA. DPGG
Template Known Secondary structure 

T
TTTTSS

BGGG






SSS.
SSST
.
GGG
Template Predicted Secondary structure 




















.






.
Template SS confidence 















































































   3......10.........20.........30.........40......... 50.........60.........70...... ...80
 
   84.....90.........100.........110.........120.........130.........140... ......150.........160..
Predicted Secondary structure 





















.











Query SS confidence 



























































.


















Query Sequence  IVWTRGTTESINMVAQCYARPRLQPGDEIIVSVAEHHANLVPWLMVAQQTGAKVVKLPLN. AQRLPDVDLLPELITPRSR
Query Conservation 
  
 
 
 
                  
                     
         .                   
Alig confidence 




















.





































.


















Template Conservation 
    
 
 

          .   

 
                 
   
  
            
             
Template Sequence  VVLGADRAVLLSLLAEASSSR. AGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTR
Template Known Secondary structure  S
TGGG.GBTT
TTS
GGGTB



TTT



GGG

TT
Template Predicted Secondary structure 


.




























Template SS confidence 















































































   81........90.........100. ........110.........120.........130.........140.........150.........
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
Predicted Secondary structure 

















































Query SS confidence 















































































Query Sequence  ILALGQMSNVTGGCPDLARAITFAHSAGMVVMVDGAQGAVHFPADVQQLDIDFYAFSGHKLYGPTGIGVLYGKSELLEAM
Query Conservation                                                          
        
 
 
         
Alig confidence 















































































Template Conservation             
    
               

                      
  
      
  
          
Template Sequence  LVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPPIGAMVFRDPSVMNSF
Template Known Secondary structure  SB
TTT
BB


TT

TTTTTT





SGGGGTS
S
S
TS
Template Predicted Secondary structure 





































Template SS confidence 















































































   160.........170.........180.........190.........200.........210.........220.........230.........
 
   243......250.........260.........270.........280....... ..290.........300........
Predicted Secondary structure 


























..............
Query SS confidence 












































. . . . . . . . . . . . . .




















Query Sequence  SPWLGGGKMVHEVSFDGFTTQSAPWKLEAGTPNVAGVIGLSAALE. . . . . . . . . . . . . . WLADYDINQAESWSRSLATLA
Query Conservation       
                        
              ..............                     
Alig confidence 











............




















..............




















Template Conservation              ............                                                        
Template Sequence  GSVSTNPYATGP. . . . . . . . . . . . ARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYL
Template Known Secondary structure 



S
TT

GG............GGG

S


TSSTT

SS
Template Predicted Secondary structure 











............








Template SS confidence 















































































   240.........250. ........260.........270.........280.........290.........300.......
 
   309310.........320..... ....330.........340.........350.........360 .........370.........380.....
Predicted Secondary structure 






..













.










Query SS confidence 
















. .


































.
























Query Sequence  EDALAKRPGFRSFRCQD. . SSLLAFDFAGVHHSDMVTLLAEYGIALRAGQHCAQ. PLLAELGVTGTLRASFAPYNTKSDV
Query Conservation     
    
        ..               
   
   

 
  
     .           



     
 


Alig confidence 
















..


































.
























Template Conservation     
                  
           
   
   

 
  
        
        



     
 


Template Sequence  MVSLRSLPLVMLIGRPEAQIPVVSFAVHKVPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEV
Template Known Secondary structure  T
TT



SSB
STTB
TT


S
TTTTTT



TT

Template Predicted Secondary structure 


































Template SS confidence 















































































   308.310.........320.........330.........340.........350.........360.........370.........380.......
 
   386...390.....
Predicted Secondary structure 
Query SS confidence 









Query Sequence  DALVNAVDRA
Query Conservation 
  
  
   
Alig confidence 









Template Conservation 
 
  

  
Template Sequence  DQLVRALASL
Template Known Secondary structure  T
Template Predicted Secondary structure 
Template SS confidence 









   388.390.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions