Job Description Q46925 Confidence 99.89% Date Thu Jan 5 12:35:54 GMT 2012 Rank 189 Aligned Residues 336 % Identity 15% Template c3bs8A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate 1-semialdehyde aminotransferase2 complexed with pyridoxamine-5'-phosphate from bacillus subtilis Resolution 2.30 Å

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		18	.	20	.	.	.	.	.	.	.							.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure												.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.
Query Sequence		D	A	G	V	Y	L	D	S	A	A	.	.	.	.	.	.	T	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	D	D	K	T	I	V	W	T	R	G	T	T
Query Conservation												.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.																		.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.																		.	.
Template Sequence		D	G	N	E	Y	I	D	Y	V	L	S	W	G	P	L	I	L	G	H	T	N	D	R	V	V	E	S	L	K	K	V	A	E	Y	G	T	S	F	G	A	P	.	.	.	.	.	.	.	.	.	T	E	V	E	N	E	L	A	K	L	V	I	D	R	V	P	S	.	.	V	E	I	V	R	M	V	S	S	G	T
Template Known Secondary structure		T							S	S	G	G	G	T	T		T	T		B	S																S			S	S		.	.	.	.	.	.	.	.	.															S	T	T	.	.		S						S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.										.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.															.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	I	N	M	V	A	Q	C	Y	A	R	P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	P	L	N	A	Q	R	L	P	D	V	D	L	L	P	E	L	I
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.
Template Sequence		E	A	T	M	S	A	L	R	L	A	R	G	Y	T	G	R	.	.	N	K	I	L	K	F	E	G	C	Y	H	G	H	G	D	S	L	L	I	K	A	G	S	G	V	A	T	L	G	L	P	D	S	P	G	V	P	E	G	I	A	K	N	T	I	T	V	P	Y	N	D	L	E	S	V	K	L	A	F	Q	Q	F
Template Known Secondary structure																T		.	.								T					S		G	G	G						S	S	S	S		B				S	S	T	T			T	T	S	S	T	T						T	T
Template Predicted Secondary structure																		.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.					.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.																															.	.	.	.
Query SS confidence																							.	.	.	.																															.	.	.	.
Query Sequence		T	P	R	S	R	I	L	A	L	G	Q	M	S	N	V	T	G	G	C	P	D	.	.	.	.	L	A	R	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	P	A	D	V	.	.	.	.	Q	Q	L	D	I	D	F	Y	A	F	S	G	H	K	L	Y	G	P	T	G	I
Query Conservation																							.	.	.	.																															.	.	.	.
Alig confidence																							.	.	.	.																															.	.	.	.																.
Template Conservation																																																																												.
Template Sequence		G	E	D	I	A	G	V	I	V	E	P	V	A	G	N	M	G	V	V	P	P	Q	E	G	F	L	Q	G	L	R	D	I	T	E	Q	Y	G	S	L	L	I	F	D	E	V	M	T	G	F	R	V	D	Y	N	C	A	Q	G	Y	F	G	V	T	P	D	L	T	C	L	G	K	V	I	G	.	G	G	L	P	V
Template Known Secondary structure		G	G	G								S	S	B		S	S	S		B				T	T													T								T	T	T	T	T	T	T	S	T	T						T	T				S						G	G	G	G	.	T	T	S	S
Template Predicted Secondary structure																																																																												.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	L	Y	G	K	S	E	L	L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S	R	S	L	A	T	L	A	E
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	Y	G	G	K	A	E	I	M	E	Q	I	A	P	S	G	P	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	G	T	L	S	G	N	P	L	A	M	T	A	G	L	E	T	L	K	Q	L	T	P	D	S	Y	K	N	F	I	K	K	G	D	R	L	E	E	G	I	S
Template Known Secondary structure												T	T	B	T	T	T	S	S	B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S	T	T														T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.																			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.															.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	L	A	K	R	P	G	F	R	S	F	R	C	Q	D	S	S	L	L	A	F	D	F	A	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	H	S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	T	L	R	A	S
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.										.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	A	A	E	A	H	G	I	P	H	T	F	N	R	A	G	S	.	M	I	G	F	F	F	T	N	E	P	V	I	N	Y	E	T	A	K	A	S	D	L	K	L	F	A	S	Y	Y	K	G	M	A	N	E	G	V	F	L	P	P	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	G	L	F
Template Known Secondary structure							T	T									T	T	.						S	S	S	S				S					T	T	S															T	T					S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		B
Template Predicted Secondary structure																			.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.															.	400	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	P	Y	N	T	K	S	D	V	D	A	L	V	N	A	V	D	R	A	L	E	L	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	T	A	H	T	D	E	D	I	E	N	T	I	Q	A	A	E	K	V	F	A	E	I	S
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions