Job Description Q46925 Confidence 99.96% Date Thu Jan 5 12:35:54 GMT 2012 Rank 61 Aligned Residues 348 % Identity 15% Template c3bcxA_ PDB info PDB header:transferase Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3- PDBTitle: e1 dehydrase Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		A	T	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	D	D	K	T	I	V	W	T	R	G	T	T	E	S	I	N	M	V	A	Q	C	Y	A	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.																		.	.	.																						.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Sequence		S	G	K	V	I	G	T	K	E	L	Q	L	M	V	E	A	S	L	D	G	W	L	T	T	.	.	.	.	.	.	.	.	.	.	.	G	R	F	N	D	A	F	E	K	K	L	G	E	Y	L	G	V	.	.	.	P	Y	V	L	T	T	T	S	G	S	S	A	N	L	L	A	L	T	A	L	T	S	P	K	L
Template Known Secondary structure																					T			B	S	.	.	.	.	.	.	.	.	.	.	.																T		.	.	.	S						S													T	T		G	G	G
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60												.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
			103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure		.																																										.
Query SS confidence		.																																										.
Query Sequence		.	R	P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	N	.	A	Q	R	L	P	D	V	D	L	L	P	E	L	I	T	P	R	S	R	I	L	A	L	G	Q	M	S	N	V	T	G	G	C	P	D	L	A
Query Conservation		.																																										.
Alig confidence		.																										.	.	.	.													.																										.	.	.
Template Conservation																												.	.	.	.																																							.	.	.
Template Sequence		G	V	R	A	L	K	P	G	D	E	V	I	T	V	A	A	G	F	P	T	T	V	N	P	T	I	.	.	.	.	Q	N	G	L	I	P	V	F	V	D	V	D	I	P	T	Y	N	V	N	A	S	L	I	E	A	A	V	S	D	K	T	K	A	I	M	I	A	H	.	.	.	T	L	G	N	L	F	D	L	A
Template Known Secondary structure		G	G	G	S			T	T							S	S	S										.	.	.	.		T	T								B		T	T	T		S	B		G	G	G							S	S									.	.	.	G	G	G
Template Predicted Secondary structure																												.	.	.	.																																							.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.				.	.	.	170	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		R	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	P	A	D	V	Q	Q	.	.	.	L	D	I	D	F	Y	A	F	S	G	H	K	L	Y	G	P	T	G	I	G	V	L	Y	G	K	S	E	L	L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F
Query Conservation																																.	.	.
Alig confidence																																.	.	.
Template Conservation
Template Sequence		E	V	R	R	V	A	D	K	Y	N	L	W	L	I	E	D	C	C	D	A	L	G	S	T	Y	D	G	K	M	A	G	T	F	G	D	I	G	T	V	S	F	Y	P	A	H	H	I	T	M	G	E	G	G	A	V	F	T	Q	S	A	E	L	K	S	I	I	E	S	F	R	D	W	G	R	D	C	Y	C	L	G
Template Known Secondary structure											T								T	T		T	T				T	T			T	T	S	S	S	S							S	T	T	S	S	S			S	S							S													B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.										.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.
Query Sequence		D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S	R	S	L	A	T	L	A	E	D	A	L	A	K	R	P	G	F	R	S	F	R	C	Q	D	S	.	.	.	.	.	.	.	.	.	S	L
Query Conservation																																																																							.	.	.	.	.	.	.	.	.
Alig confidence																				.																																																			.	.	.	.	.	.	.	.	.
Template Conservation																				.
Template Sequence		S	L	P	F	G	Y	D	H	K	Y	T	Y	S	H	L	G	Y	N	.	L	K	I	T	D	M	Q	A	A	C	G	L	A	Q	L	E	R	I	E	E	F	V	E	K	R	K	A	N	F	K	Y	L	K	D	A	L	Q	S	C	A	D	F	I	E	L	P	E	A	T	E	N	S	D	P	S	W	F	G	F	P	I
Template Known Secondary structure					T	T			G	G	G		B		S				B	.				B																																G	G	G	G	T	T	T								T	T						S	S
Template Predicted Secondary structure																				.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370																	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	F	D	F	A	G	V	H	H	S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	R	A	S	F	A	P	Y	N	T	K	S	D	V	D	A	L	V	N	A	V
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	K	E	D	S	G	V	S	R	I	D	L	V	K	F	L	D	E	A	K	V	G	T	R	L	L	F	A	G	N	L	T	R	Q	P	Y	F	H	D	V	K	Y	R	V	V	G	E	L	T	N	T	D	R	I	M	N	Q	T	F	W	I	G	I	Y	P	G	L	T	H	D	H	L	D	Y	V	V	S	K	F
Template Known Secondary structure					G	G	G	S	S												T	T	B			B			T	T	S	S	G	G	G	S	G	G	G	T	T							S																		S	T	T
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
		393	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	F	F
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		430	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions