Job Description Q46925 Confidence 99.93% Date Thu Jan 5 12:35:54 GMT 2012 Rank 143 Aligned Residues 354 % Identity 19% Template c3asaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis Resolution 2.05 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.			80	.	.
Predicted Secondary structure																										.																																																			.	.
Query SS confidence																										.																																																			.	.
Query Sequence		P	A	Q	F	R	A	Q	F	P	A	L	Q	D	A	G	V	Y	L	D	S	A	A	T	A	.	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	.	.	D	D	K
Query Conservation																										.																																																			.	.
Alig confidence											.	.														.																																			.	.	.	.													.	.
Template Conservation											.	.																																																	.	.	.	.
Template Sequence		V	A	Q	F	R	L	E	N	P	.	.	Q	H	T	V	I	N	L	S	I	G	D	T	T	Q	P	L	N	A	S	V	A	E	A	F	A	S	S	I	A	R	L	S	S	P	T	T	C	R	G	Y	G	P	D	F	G	L	P	A	.	.	.	.	L	R	Q	K	L	S	E	D	F	Y	R	G	F	V	D	A	K
Template Known Secondary structure										T	.	.	T	S						S	S																							T	S	S	S								T	T					.	.	.	.								T	T	S	T	T	S	S		G	G
Template Predicted Secondary structure											.	.																																																	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.					80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	V	W	T	R	G	T	T	E	S	I	N	M	V	A	Q	C	Y	A	R	P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	N	A	Q	R	L	P	D	V	D	L	L	P	E	L	I	T	P	R	S	R
Query Conservation
Alig confidence																			.	.	.	.	.																									.	.	.																								.	.	.
Template Conservation																			.	.	.	.	.																									.	.	.																								.	.	.
Template Sequence		E	I	F	I	S	D	G	A	K	V	D	L	F	R	L	L	S	.	.	.	.	.	F	F	G	P	N	Q	T	V	A	I	Q	D	P	S	Y	P	A	Y	L	D	I	A	R	L	.	.	.	T	G	A	K	E	I	I	A	L	P	C	L	Q	E	N	A	F	F	P	E	F	P	E	.	.	.	D	T	H	I	D
Template Known Secondary structure		G					S												.	.	.	.	.				S	S								S												.	.	.	T	T		S									G	G	G	T	T						T	.	.	.	T				S
Template Predicted Secondary structure																			.	.	.	.	.																									.	.	.																								.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.						.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.				.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160				.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		I	L	A	L	G	Q	M	S	N	V	T	G	G	C	P	D	.	.	.	L	A	R	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	P	A	D	V	Q	Q	L	D	I	D	F	Y	A	F	S	G	H	K	L	Y	G	P	T	G	I	G	V	L	Y	G	K	S	E	L	L
Query Conservation																		.	.	.
Alig confidence																		.	.	.																																	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.
Template Sequence		I	L	C	L	C	S	P	N	N	P	T	G	T	V	L	N	K	D	Q	L	R	A	I	V	H	Y	A	I	E	H	E	I	L	I	L	F	D	A	A	Y	S	T	F	I	S	D	P	S	L	P	K	.	.	.	.	.	.	.	.	S	I	F	E	I	P	D	A	R	F	C	A	I	E	I	N	S	F	S	K	P
Template Known Secondary structure							S	S		T	T	T																			T	T								T	T	G	G	G				T	T	S		S	.	.	.	.	.	.	.	.	S	G	G	G	S	T	T	G	G	G	T									G	G
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.									.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	.	.	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S	R	S	L	A	T	L	A	E	D	A	L	A	K	R	P	G
Query Conservation																													.	.
Alig confidence																													.	.																																																		.
Template Conservation																																																																																.
Template Sequence		L	G	F	A	G	I	R	L	G	W	T	V	I	P	Q	E	L	T	Y	A	D	G	H	F	V	I	Q	D	W	E	R	F	L	S	T	T	F	N	G	A	S	I	P	A	Q	E	A	G	V	A	G	L	S	I	L	P	Q	L	E	A	I	H	Y	Y	R	E	N	S	D	L	L	R	K	A	L	L	A	T	.	G
Template Known Secondary structure		G	T	T	T	T										T	T		B		T	T	S		B																															T	T	T																					T	.	T
Template Predicted Secondary structure																																																																																.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																			.	.											.
Query SS confidence																			.	.											.
Query Sequence		F	R	S	F	R	C	Q	D	S	S	L	L	A	F	D	F	A	.	.	G	V	H	H	S	D	M	V	T	L	.	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	T	L	R	A	S	F	A	P	Y	N	T	K	S	D	V	D	A	L	V	N	A	V	D
Query Conservation																			.	.											.
Alig confidence																			.	.											.																		.	.	.	.	.	.											.	.
Template Conservation																																																	.	.	.	.	.	.											.	.
Template Sequence		F	E	V	F	G	G	E	H	A	P	Y	L	W	V	K	P	T	Q	A	N	I	S	D	R	D	L	F	D	F	F	L	R	E	Y	H	I	A	I	T	P	G	I	G	F	G	R	S	.	.	.	.	.	.	G	S	G	F	V	R	F	S	S	L	.	.	G	K	R	E	D	I	L	A	A	C	E	R	L	Q
Template Known Secondary structure								S	S	S	S									T	T			T	T	T										S						G	G	G	G		G	G	.	.	.	.	.	.	G	T	T								.	.	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.											.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.							.	.	.	.	.	.	370	.	.	.			.	.	.	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions