Job Description Q46925 Confidence 100.00% Date Thu Jan 5 12:35:54 GMT 2012 Rank 25 Aligned Residues 360 % Identity 14% Template c2z9wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal Resolution 1.70 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	P	A	L	Q	D	A	G	V	Y	L	D	S	A	A	T	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	D	D	K	T	I	V	W	T	R	G	T	T
Query Conservation
Alig confidence														.																		.	.	.	.	.	.	.	.	.	.																														.
Template Conservation														.																		.	.	.	.	.	.	.	.	.	.																														.
Template Sequence		R	Y	P	E	H	A	D	P	V	I	T	L	.	T	A	G	P	V	N	A	Y	P	E	V	L	R	G	L	G	R	.	.	.	.	.	.	.	.	.	.	T	V	L	Y	D	Y	D	P	A	F	Q	L	L	Y	E	K	V	V	D	K	A	Q	K	A	M	R	L	S	N	.	K	P	V	I	L	H	G	E	P	V
Template Known Secondary structure					T	T	S			S				.		S	S	S											T	T	S	.	.	.	.	.	.	.	.	.	.					T	T	S																		T	T		S	S	.						S	S		T
Template Predicted Secondary structure														.																		.	.	.	.	.	.	.	.	.	.																														.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.											.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		E	S	I	N	M	V	A	Q	C	Y	A	R	P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	N	A	Q	R	L	P	D	V	D	L	L	P	E	L	I	T	P	.	.	R	S	R	I	L	A	L	G	Q	M
Query Conservation																																																																						.	.
Alig confidence												.	.	.	.																	.	.																																					.	.
Template Conservation												.	.	.	.																	.	.
Template Sequence		L	G	L	E	A	A	A	A	S	L	.	.	.	.	I	S	P	D	D	V	V	L	N	L	A	S	G	V	Y	G	.	.	K	G	F	G	Y	W	A	K	R	Y	S	P	H	L	L	E	I	E	V	P	Y	N	E	A	I	D	P	Q	A	V	A	D	M	L	K	A	H	P	E	I	T	V	V	S	V	C	H	H
Template Known Secondary structure												.	.	.	.			T	T								S	S				.	.												S									T	T	S															T	T								S
Template Predicted Secondary structure												.	.	.	.																	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80					.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		S	N	V	T	G	G	C	P	D	L	A	R	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	P	A	D	V	Q	Q	L	D	I	D	F	Y	A	F	S	G	H	K	L	Y	.	G	P	T	G	I	G	V	L	Y	G	K	S	E	L	L	E	A	M	S	P	W	L	G	G
Query Conservation																																																									.
Alig confidence																																																									.
Template Conservation
Template Sequence		D	T	P	S	G	T	I	N	P	I	D	A	I	G	A	L	V	S	A	H	G	A	Y	L	I	V	D	A	V	S	S	F	G	G	M	K	T	H	P	E	D	C	K	A	D	I	Y	V	T	G	P	N	K	C	L	G	A	P	P	G	L	T	M	M	G	V	S	E	R	A	W	A	K	M	K	A	N	P	L	A
Template Known Secondary structure			G	G	G	T															T	T								T	T	T	B	T	T	B	S			G	G	G	T	T		S						S	S	S	T	T				S																	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		G	K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S	R	S	L	A	T	L	A	E	D	A	L	A	K	R	P	G	F	R	S	F	R	C	Q	D	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																							.																																														.										.	.	.
Template Conservation																							.																																														.
Template Sequence		P	R	A	S	M	L	S	I	V	D	W	E	N	A	W	S	R	D	K	P	F	.	P	F	T	P	S	V	S	E	I	N	G	L	D	V	A	L	D	L	Y	L	N	E	G	P	E	A	V	W	A	R	H	A	L	T	A	K	A	M	R	A	G	V	T	A	M	.	G	L	S	V	W	A	A	S	D	S	I	A
Template Known Secondary structure				S	S	T	T		S	G	G	G	T	T	T	T	S	T	T	S			.	S	S																																												.	T			B	S	S	S	S	G	G	G	B
Template Predicted Secondary structure																							.																																														.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.
			326	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.										.															.																													.
Query SS confidence		.										.															.																													.
Query Sequence		.	S	S	L	L	A	F	D	F	A	.	G	V	H	H	S	D	M	V	T	L	L	A	E	Y	.	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	T	L	R	A	S	F	.	A	P	Y	N	T	K	S	D	V	D	A	L	V	N	A	V	D	R	A	L	E	L	L
Query Conservation		.										.															.																													.
Alig confidence		.										.															.											.	.	.	.	.	.	.	.											.
Template Conservation																																						.	.	.	.	.	.	.	.
Template Sequence		S	P	T	T	T	A	V	R	T	P	D	G	V	D	E	K	A	L	R	Q	A	A	R	A	R	Y	G	V	V	F	S	S	G	R	G	E	.	.	.	.	.	.	.	.	T	L	G	K	L	T	R	I	G	H	M	G	P	T	A	Q	P	I	Y	A	I	A	A	L	T	A	L	G	G	A	M	N	A	A
Template Known Secondary structure			S	S								T	T																			B				G	G	.	.	.	.	.	.	.	.	G	T	T	T								G	G	G		S																		T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.									.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions