Job Description Q46925 Confidence 99.95% Date Thu Jan 5 12:35:54 GMT 2012 Rank 90 Aligned Residues 346 % Identity 15% Template c2r0tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase; PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.				.	.
Predicted Secondary structure																																																																													.	.	.
Query SS confidence																																																																													.	.	.
Query Sequence		A	T	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	D	D	K	T	I	V	W	T	R	G	T	T	E	S	I	N	M	V	A	Q	C	Y	.	.	.	A	R
Query Conservation																																																																													.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.																	.	.	.																					.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Sequence		A	S	S	T	W	D	D	L	E	Y	K	A	I	Q	S	V	L	D	S	K	M	F	T	M	G	.	.	.	.	.	.	.	.	.	.	.	E	Y	V	K	Q	Y	E	T	Q	F	A	K	T	F	G	S	.	.	.	K	Y	A	V	M	V	S	S	G	S	T	A	N	L	L	M	I	A	A	L	F	F	T	K	K
Template Known Secondary structure																					T			B	S		.	.	.	.	.	.	.	.	.	.	.															T		.	.	.	S						S													T	T	S	S	S	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.												.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		P	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	N	A	Q	.	R	L	P	D	V	D	L	L	P	E	L	I	T	P	R	S	R	I	L	A	L	G	Q	M	S	N	V	T	G	G	C	P	D	L	A	R	A
Query Conservation																																												.
Alig confidence																										.	.	.	.															.																							.	.	.
Template Conservation																										.	.	.	.																																						.	.	.
Template Sequence		P	R	L	K	K	G	D	E	I	I	V	P	A	V	S	W	S	T	T	Y	Y	P	L	Q	.	.	.	.	Q	Y	G	L	R	V	K	F	V	D	I	D	I	N	T	L	N	I	D	I	E	S	L	K	E	A	V	T	D	S	T	K	A	I	L	T	V	.	.	.	N	L	L	G	N	P	N	N	F	D	E	I
Template Known Secondary structure			S			T	T							S		S										.	.	.	.		T	T								B		T	T	T		S	B											S	S								.	.	.		B	T	T	B
Template Predicted Secondary structure																										.	.	.	.																																						.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.					.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.																					.
Query SS confidence																								.	.	.																					.
Query Sequence		I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	.	.	.	P	A	D	V	Q	Q	L	D	I	D	F	Y	A	F	S	G	H	K	L	Y	.	G	P	T	G	I	G	V	L	Y	G	K	S	E	L	L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D
Query Conservation																								.	.	.																					.
Alig confidence																								.	.	.																					.
Template Conservation
Template Sequence		N	K	I	I	G	G	R	D	I	I	L	L	E	D	N	C	E	S	M	G	A	T	F	N	N	K	C	A	G	T	F	G	L	M	G	T	F	S	S	F	Y	S	K	H	I	A	T	M	E	G	G	C	I	V	T	D	D	E	E	I	Y	H	I	L	L	C	I	R	A	H	G	W	T	R	N	L	P	K	K	N
Template Known Secondary structure						T	T	S	S								T	T		T	T				T	T			T	T	S	S	S	S								T	T	S	S	S		S	S	S							S												T	B	T	T	B	S	T	T	S		S	B
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		259	260	.	.	.	.	.	.						.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.				.	.	.	.	330
Predicted Secondary structure										.	.	.	.	.																																																												.	.	.
Query SS confidence										.	.	.	.	.																																																												.	.	.
Query Sequence		G	F	T	T	Q	S	A	P	.	.	.	.	.	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S	R	S	L	A	T	L	A	E	D	A	L	A	K	R	P	G	F	R	S	F	R	C	Q	D	.	.	.	S	S	L	L	A
Query Conservation										.	.	.	.	.																																																												.	.	.
Alig confidence										.	.	.	.	.																																																												.	.	.
Template Conservation
Template Sequence		K	V	T	G	V	K	S	D	D	Q	F	E	E	S	F	K	F	V	L	P	G	Y	N	V	R	P	L	E	M	S	G	A	I	G	I	E	Q	L	K	K	L	P	R	F	I	S	V	R	R	K	N	A	E	Y	F	L	D	K	F	K	D	H	P	Y	L	D	V	Q	Q	E	T	G	E	S	S	W	F	G	F	S
Template Known Secondary structure		S	S	S	S	B			S						T	T		B		S				B				B																																	T	T		S	S								S	B
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		331	.	.	.				.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.																		.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure						.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	D	F	A	.	.	.	G	V	H	H	S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	G	T	L	R	A	S	F	A	P	Y	N	T	K	S	D	V	D	A	L	V	N
Query Conservation						.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	I	I	K	K	D	S	G	V	I	R	K	Q	L	V	E	N	L	N	S	A	G	I	E	C	R	P	I	V	T	G	N	F	L	K	N	T	D	V	L	K	Y	F	D	Y	T	V	H	N	N	V	D	N	A	E	Y	L	D	K	N	G	L	F	V	G	N	H	Q	I	E	L	F	D	E	I	D	Y	L	R	E
Template Known Secondary structure						T	T	S														T	T	B			B		S	T	T	S		G	G	G						T	T							S																			S	S
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		391	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	K
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		386	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions