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Job DescriptionQ46925
Confidence99.95%DateThu Jan 5 12:35:54 GMT 2012
Rank92Aligned Residues333
% Identity16%Templatec2po3B_
PDB info PDB header:transferaseChain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  LKPEAVVEATQQFYSLSAGNVHRSQFAEAQRLTARYEAAREKVAQLLNAPDDKTIVWTRGTTESINMVAQCYARPRLQPG
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Template Sequence  IDRARLYERLDRALDSQWLSNG. . . . . . . . . . GPLVREFEERVAGLAGV. . . RHAVATCNATAGLQLLAHAAG. . . . . LT
Template Known Secondary structure 

T

SSS..........
TS...SS
T.....

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Query Sequence  DEIIVSVAEHHANLVPWLMVAQQTGAKVVKLPLNAQ. RLPDVDLLPELITPRSRILALGQMSNVTGGCPDLARAITFAHS
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Template Sequence  GEVIMPSMTFAATPHALR. . . . WIGLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVV. . . GVHLWGRPCAADQLRKVADE
Template Known Secondary structure  SSSS
T....TT

B
TTTSSB
STT

TT...
GGG



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Query Sequence  AGMVVMVDGAQGAVHFPADV. . . QQLDIDFYAFSGHKLYGPTGIGVLYG. KSELLEAMSPWLGGGKMVHEVSFDGFTTQS
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Template Sequence  HGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAK
Template Known Secondary structure  T

TT
TT
TTTTSSSSS

TTSSS

SS
S
TBTTTT
TT

TT


B
B
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   2164.....2170.........2180.........2190.........2200.........2210.........2220.........2230.........2240...
 
   265....270.........280.........290.........300.........310.........320..... ....330.... .
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Query Sequence  APWKLEAGTPNVAGVIGLSAALEWLADYDINQAESWSRSLATLAEDALAKRPGFRSFRCQD. . . . . SSLLAFDFA. . . . G
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Template Sequence  MSE. . . . . . . . . . . . . . AAAAMGLTSLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTG
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S
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   2244.. ...2250.........2260.........2270.........2280.........2290.........2300.........
 
   336...340.........350.........360....... ..370.........380.........390.........400.
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Query Sequence  VHHSDMVTLLAEYGIALRAGQHCAQPLLAELG. . . . . . . . . . . . . VTGTLRASFAPYNTKSDVDALVNAVDRALELLVD
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Template Sequence  IHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRGRE
Template Known Secondary structure  S
TT
B
TT
S
GGGSTTTTTS




TT

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S
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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