Job Description Q46925 Confidence 99.96% Date Thu Jan 5 12:35:54 GMT 2012 Rank 63 Aligned Residues 349 % Identity 14% Template c2okkA_ PDB info PDB header:lyase Chain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65) Resolution 2.30 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		Y	L	D	S	A	A	T	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	D	D	K	T	.	I	V	W	T	R	G	T	T	E	S	I	N	M	V	A	Q	C
Query Conservation																																																																.
Alig confidence																									.	.	.	.																																				.
Template Conservation																									.	.	.	.
Template Sequence		Y	F	N	Q	L	S	T	G	L	D	M	V	G	L	A	A	D	W	L	T	S	T	A	.	.	.	.	N	T	N	M	F	T	Y	E	I	A	P	V	F	V	L	L	E	Y	V	T	L	K	K	M	R	E	I	I	G	W	P	G	G	S	G	D	G	I	F	S	P	G	G	A	I	S	N	M	Y	A	M	M	I
Template Known Secondary structure				S	S	S	S																		.	.	.	.				S	S		T	T	T																				T		G	G	G		S						S	S
Template Predicted Secondary structure																									.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		101	.	.	.	.	.	.											.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.							.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.																																																							.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.																																																							.	.	.	.	.	.
Query Sequence		Y	A	R	P	R	L	Q	.	.	.	.	.	.	.	.	.	.	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	A	Q	Q	T	G	A	K	V	V	K	L	P	L	N	A	Q	R	L	P	D	V	D	L	L	P	E	L	I	T	P	R	S	.	.	.	.	.	.	R	I	L
Query Conservation									.	.	.	.	.	.	.	.	.	.																																																							.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.																		.																																					.	.	.	.	.	.
Template Conservation																																				.
Template Sequence		A	R	F	K	M	F	P	E	V	K	E	K	G	M	A	A	L	P	R	L	I	A	F	T	S	E	H	S	H	F	S	L	K	K	.	G	A	A	A	L	G	I	G	T	D	S	V	I	L	I	K	C	D	E	R	G	K	M	I	P	S	D	L	E	R	R	I	L	E	A	K	Q	K	G	F	V	P	F	L	V
Template Known Secondary structure								T	T						G	G	G	S									T	T	S		T					.					T	T	S		G	G	G						B		T	T	S		B															T	T
Template Predicted Secondary structure																																				.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210							.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.
Query Sequence		A	L	G	Q	M	S	N	V	T	G	G	C	P	D	L	A	R	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	P	A	D	V	Q	Q	.	.	.	.	.	.	L	D	I	D	F	Y	A	F	S	G	H	K	L	Y	G	P	T	G	I	G	V	L	Y	G	K	S	E	L
Query Conservation																																																.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.
Template Conservation
Template Sequence		S	A	T	A	G	T	T	V	Y	G	A	F	D	P	L	L	A	V	A	D	I	C	K	K	Y	K	I	W	M	H	V	D	A	A	W	G	G	G	L	L	M	S	R	K	H	K	W	K	L	S	G	V	E	R	A	N	S	V	T	W	N	P	H	M	M	G	V	P	L	Q	C	S	A	L	L	V	R	E	E	G
Template Known Secondary structure					B	S		T	T	T			B														T								T	T	G	G	G	G	G	G		T	T	T	G	G	G	G	T	T	G	G	G		S												S	S								S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S	R	S	L	A	T	L	A	E	D	A	L	A	K	R	P	G	F
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	M	Q	N	C	N	Q	M	H	D	L	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	G	D	K	A	L	Q	C	G	R	H	V	D	V	F	K	L	W	L	M	W	R	A	K	G	T	T	G	F	E	A	H	V	D	K	C	L	E	L	A	E	Y	L	Y	N	I	I	K	N	R	E	G	Y
Template Known Secondary structure												G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G	S	S		S	S																																								T	S	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.														.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		319	320	.			.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.															.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.
Predicted Secondary structure					.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Query SS confidence					.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Query Sequence		R	S	F	.	.	R	C	Q	D	S	S	L	L	A	F	D	F	A	G	V	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	T	L	R	A	S	F	.	A	P	Y	N	T
Query Conservation					.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Alig confidence					.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.												.
Template Conservation																																																										.	.	.	.	.	.	.
Template Sequence		E	M	V	F	D	G	K	P	Q	H	T	N	V	C	F	W	Y	I	P	P	S	L	R	T	L	E	E	R	M	S	R	L	S	K	V	A	P	V	I	K	A	R	M	M	E	Y	G	T	T	M	V	S	Y	Q	P	L	.	.	.	.	.	.	.	G	D	K	V	N	F	F	R	M	V	I	S	N	P	A	A	T
Template Known Secondary structure				S	S	S	S			S	S	S									T	T	T	T	T									T	T													T	S									.	.	.	.	.	.	.	T	T												T	T
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.								.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	D	V	D	A	L	V	N	A	V	D	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	Q	D	I	D	F	L	I	E	E	I	E	R	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		568	.	570	.	.	.	.	.	.	.	.	.	580	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions