Job Description Q46925 Confidence 99.91% Date Thu Jan 5 12:35:54 GMT 2012 Rank 172 Aligned Residues 334 % Identity 11% Template c1oatB_ PDB info PDB header:aminotransferase Chain: B: PDB Molecule:ornithine aminotransferase; PDBTitle: ornithine aminotransferase Resolution 2.50 Å

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		18	.	20	.	.	.	.	.	.	.							.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure												.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.
Query Sequence		D	A	G	V	Y	L	D	S	A	A	.	.	.	.	.	.	T	A	L	K	P	E	A	V	V	E	A	T	Q	Q	F	Y	S	L	S	A	G	N	V	H	R	S	Q	F	A	E	A	Q	R	L	T	A	R	Y	E	A	A	R	E	K	V	A	Q	L	L	N	A	P	D	D	K	T	I	V	W	T	R	G	T	T
Query Conservation												.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.																														.	.	.	.	.	.	.																.	.	.
Template Conservation																																															.	.	.	.	.	.	.																.	.	.
Template Sequence		E	G	R	K	Y	F	D	F	L	S	S	Y	S	A	V	N	Q	G	H	C	H	P	K	I	V	N	A	L	K	S	Q	V	D	K	L	T	L	T	S	R	A	F	Y	N	N	.	.	.	.	.	.	.	V	L	G	E	Y	E	E	Y	I	T	K	L	F	N	Y	.	.	.	H	K	V	L	P	M	N	T	G	V
Template Known Secondary structure		T							S	S					T		T	T		B	T													T	T		S				T	T	S			S	.	.	.	.	.	.	.	S													T		.	.	.	S						S	S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.																.	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.								.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.							.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.					130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160
Predicted Secondary structure															.	.	.	.	.	.																										.	.	.	.																													.
Query SS confidence															.	.	.	.	.	.																										.	.	.	.																													.
Query Sequence		E	S	I	N	M	V	A	Q	C	Y	A	R	P	.	.	.	.	.	.	R	L	Q	P	G	D	E	I	I	V	S	V	A	E	H	H	A	N	L	V	P	W	L	M	V	.	.	.	.	A	Q	Q	T	G	A	K	V	V	K	L	P	L	N	A	Q	R	L	P	D	V	D	L	L	P	E	L	I	.	T	P	R
Query Conservation															.	.	.	.	.	.																										.	.	.	.																													.
Alig confidence															.	.	.	.	.	.																										.	.	.	.																													.
Template Conservation
Template Sequence		E	A	G	E	T	A	C	K	L	A	R	K	W	G	Y	T	V	K	G	I	Q	K	Y	K	A	K	I	V	F	A	A	G	N	F	W	G	R	T	L	S	A	I	S	S	S	T	D	P	T	S	Y	D	G	F	G	P	F	M	P	G	F	D	I	I	P	Y	N	D	L	P	A	L	E	R	A	L	Q	D	P	N
Template Known Secondary structure																		T	T				T	T								T	T					S	S					T	T								T	T	S		S			S	S						T	T									T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.						.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																				.	.	.	.																												.	.	.	.	.
Query SS confidence																				.	.	.	.																												.	.	.	.	.
Query Sequence		S	R	I	L	A	L	G	Q	M	S	N	V	T	G	G	C	P	D	.	.	.	.	L	A	R	A	I	T	F	A	H	S	A	G	M	V	V	M	V	D	G	A	Q	G	A	V	H	F	P	.	.	.	.	.	A	D	V	Q	Q	L	D	I	D	F	Y	A	F	S	G	H	K	L	Y	G	P	T	G	I	G	V
Query Conservation																				.	.	.	.																												.	.	.	.	.
Alig confidence																				.	.	.	.																												.	.	.	.	.
Template Conservation
Template Sequence		V	A	A	F	M	V	E	P	I	Q	G	E	A	G	V	V	V	P	D	P	G	Y	L	M	G	V	R	E	L	C	T	R	H	Q	V	L	F	I	A	D	E	I	Q	T	G	L	A	R	T	G	R	W	L	A	V	D	Y	E	N	V	R	P	D	I	V	L	L	G	K	A	L	S	G	G	L	Y	P	V	S	A
Template Known Secondary structure									S	S	B	T	T	T	T		B				T	T													T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	G	T				S						G	G	G	G	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	G	K	S	E	L	L	E	A	M	S	P	W	L	G	G	G	K	M	V	H	E	V	S	F	D	G	F	T	T	Q	S	A	P	W	K	L	E	A	G	T	P	N	V	A	G	V	I	G	L	S	A	A	L	E	W	L	A	D	Y	D	I	N	Q	A	E	S	W	S	R	S	L	A	T	L	A	E	D	A
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	C	D	D	D	I	M	L	T	I	K	P	G	E	H	G	S	T	Y	G	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	G	C	R	V	A	I	A	A	L	E	V	L	E	E	E	N	L	A	E	N	A	D	K	L	G	I	I	L	R	N	E
Template Known Secondary structure										T	T	S		T	T	S	S			S	S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.																									.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		312	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.				.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure							.																		.	.	.
Query SS confidence							.																		.	.	.
Query Sequence		L	A	K	R	P	.	G	F	R	S	F	R	C	Q	D	S	S	L	L	A	F	D	F	.	.	.	A	G	V	H	H	S	D	M	V	T	L	L	A	E	Y	G	I	A	L	R	A	G	Q	H	C	A	Q	P	L	L	A	E	L	G	V	T	G	T	L	R	A	S	F	A	P	Y	N	T	K	S	D	V	D	A
Query Conservation							.																		.	.	.
Alig confidence							.																		.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	M	K	L	P	S	D	V	V	T	A	V	R	G	K	G	L	L	N	A	I	V	I	K	E	T	K	D	W	D	A	W	K	V	C	L	R	L	R	D	N	G	L	L	A	K	P	T	.	.	.	.	.	.	.	.	.	.	.	.	H	G	D	I	I	R	F	A	P	P	L	V	I	K	E	D	E	L	R	E
Template Known Secondary structure			T	T	S		T	T	T								T	T									B	T	T	B												T	T					B	S	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S								T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.													.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		388	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	N	A	V	D	R	A	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	E	I	I	N	K	T	I	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions