Job Description P33013 Confidence 100.00% Date Thu Jan 5 11:50:49 GMT 2012 Rank 5 Aligned Residues 301 % Identity 30% Template c3mfdB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:d-alanyl-d-alanine carboxypeptidase dacb; PDBTitle: the structure of the beta-lactamase superfamily domain of d-alanyl-d-2 alanine carboxypeptidase from bacillus subtilis Resolution 1.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	H	A	G	S	W	V	L	M	D	Y	T	T	G	Q	I	L	T	A	G	N	E	H	Q	Q	R	N	P	A	S	L	T	K	L	M	T	G	Y	V	V	D	R	A	I	D	S	H	R	I	T	P	D	D	I	V	T	V	G	R	D	A	W	A	K	D	N	P	V	F	V	G	S	S	L	M	F	L	K	E
Query Conservation
Alig confidence																																													.	.	.	.	.																		.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.																		.	.	.	.	.	.
Template Sequence		D	V	S	A	K	S	A	I	I	I	D	G	A	S	G	R	V	L	Y	A	K	D	E	H	Q	K	R	R	I	A	S	I	T	K	I	X	T	A	V	L	A	I	E	.	.	.	.	.	S	G	K	X	D	Q	T	V	T	V	S	A	N	A	V	R	T	.	.	.	.	.	.	E	G	S	A	I	Y	L	T	E
Template Known Secondary structure				S		S							T	T	T								S	T	T			B			G	G	G	G											.	.	.	.	.	T	T		T	T	S										T		.	.	.	.	.	.		S	S						T
Template Predicted Secondary structure																																													.	.	.	.	.																		.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.						.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.							90	.	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		G	D	R	V	S	V	R	D	L	S	R	G	L	I	V	D	S	G	N	D	A	C	V	A	L	A	D	Y	I	A	G	G	Q	R	Q	F	V	E	M	M	N	N	Y	A	E	K	L	H	L	K	D	T	H	F	E	T	V	H	G	L	D	A	.	P	G	Q	H	S	S	A	Y	D	L	A	V	L	S	R	A	I
Query Conservation																																																																.
Alig confidence																																																																.
Template Conservation
Template Sequence		G	Q	K	V	K	L	K	D	L	V	Y	G	L	X	L	R	S	G	N	D	A	A	V	A	I	A	E	H	V	G	G	S	L	D	G	F	V	Y	X	X	N	Q	K	A	E	Q	L	G	X	K	N	T	R	F	Q	N	P	H	G	L	D	D	H	E	N	H	Y	S	T	A	Y	D	X	A	I	L	T	K	Y	A
Template Known Secondary structure		T																														S	S																T		T	T		B		S	S	S	S			S		S	S	S		B	B
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210			.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		I	H	G	E	P	E	F	Y	H	M	Y	S	E	K	S	L	T	W	N	.	.	G	I	T	Q	Q	N	R	N	G	L	L	W	D	K	T	M	N	V	D	G	L	K	T	G	H	T	S	G	A	G	F	N	L	I	A	S	A	V	D	G	Q	R	R	L	I	A	V	V	M	G	A	D	S	A	K	G	R	E	E
Query Conservation																					.	.
Alig confidence				.																	.	.																																																						.	.	.
Template Conservation				.																																																																								.	.	.
Template Sequence		X	K	.	L	K	D	Y	Q	K	I	S	G	T	K	I	Y	K	A	E	T	X	E	S	V	W	K	N	K	N	K	L	L	T	X	L	Y	P	Y	S	T	G	G	K	T	G	Y	T	K	L	A	K	R	T	L	V	S	T	A	S	K	D	G	I	D	L	I	A	V	T	I	N	D	P	N	.	.	.	D	W	D
Template Known Secondary structure		T	T	.	S								T		S					S	S	S	S						S						T	T		T	T										T	T	T											T	T									S		T	T	.	.	.
Template Predicted Secondary structure				.																																																																								.	.	.
Template SS confidence
		179	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.				.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	R	K	L	L	R	W	G	Q	Q	N	F	T	T	V	Q	I	L	H	R	G	K	K	V	G	T	E	R	I	W	Y	G	D	K	E	N	I	D	L	G	T	E	Q	E	F	W	M	V	L	P	K	A	E	I	P	H	I	K	A	K	Y	T	L	D	G	K	E	L	T	A	P	I	S	A	H	Q	R	V	G
Query Conservation
Alig confidence																								.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	H	X	K	X	F	N	Y	V	F	E	H	Y	Q	T	Y	L	I	A	K	D	I	.	.	.	.	.	.	P	K	L	K	G	T	F	Y	E	S	K	A	F	I	K	R	D	I	T	Y	L	L	T	E	E	E	K	E	N	V	K	I	N	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	G
Template Known Secondary structure																								.	.	.	.	.	.	G	G	G	T	T	S	T	T	T	T	T				S	S													T							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.							.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.															.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	E	L	Y	D	R	D	K	Q	V	A	H	W	P	L	V	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	X	E	I	X	F	N	D	A	T	I	A	K	V	P	I	Y	Y	E
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions