Job Description P33013 Confidence 98.83% Date Thu Jan 5 11:50:49 GMT 2012 Rank 76 Aligned Residues 212 % Identity 17% Template c3fwlA_ PDB info PDB header:transferase, hydrolase Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: crystal structure of the full-length transglycosylase pbp1b2 from escherichia coli Resolution 3.09 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.													.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.																															.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.																															.
Query Sequence		S	W	V	L	M	D	Y	T	T	G	Q	I	L	T	.	.	.	.	.	.	.	.	.	.	.	.	A	G	N	E	H	Q	Q	R	N	P	A	S	L	T	K	L	M	T	G	Y	V	V	D	R	A	I	D	S	H	R	.	I	T	P	D	D	I	V	T	V	G	R	D	A	W	A	K	D	N	P	V	F	V	G
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.																															.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.				.
Template Conservation																																																				.	.	.
Template Sequence		A	I	V	V	V	D	R	F	S	G	E	V	R	A	X	V	G	G	S	E	P	Q	F	A	G	Y	N	R	A	X	Q	A	R	R	S	I	G	S	L	A	K	P	A	T	Y	L	T	A	L	S	.	.	.	Q	P	K	I	Y	R	L	N	T	W	I	A	D	A	P	I	A	L	R	Q	P	N	G	Q	V	W	S
Template Known Secondary structure								T	T	T		B							S	S	S	S	T	T		S	S		T	T	T	S						G	G	G	G										T	.	.	.	S		S	S			T	T													S	S	S
Template Predicted Secondary structure																																																				.	.	.
Template SS confidence
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.				.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		S	S	L	M	F	L	K	E	.	.	G	D	R	V	S	V	R	D	L	S	R	G	L	I	V	D	S	G	N	D	A	C	V	A	L	A	D	Y	I	A	G	G	Q	R	Q	F	V	E	M	M	N	N	Y	A	E	K	L	H	L	K	D	T	H	F	E	T	V	H	G	L	D	A	P	G	Q	H	S	S	A	Y
Query Conservation										.	.
Alig confidence										.	.										.	.	.	.																		.	.	.	.	.	.
Template Conservation																					.	.	.	.																		.	.	.	.	.	.
Template Sequence		P	Q	N	D	D	R	R	Y	S	E	S	G	R	V	X	L	V	D	A	.	.	.	.	L	T	R	S	X	N	V	P	T	V	N	L	G	X	A	L	G	.	.	.	.	.	.	L	P	A	V	T	E	T	W	I	K	L	G	V	P	K	D	Q	L	H	P	V	P	A	X	L	L	G	A	L	N	L	T	P	I
Template Known Secondary structure					T	T					T	T	S								.	.	.	.			T	T		S												.	.	.	.	.	.												T			G	G	G				S	T					T
Template Predicted Secondary structure																					.	.	.	.																		.	.	.	.	.	.
Template SS confidence
		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.					.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.							.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.																															.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	A	V	L	S	R	A	I	I	H	G	E	P	E	F	Y	H	M	Y	S	E	K	S	L	T	W	N	G	I	T	Q	Q	N	R	N	G	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	D	K	T	M	N	V	D	G	L	K
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		E	V	A	Q	A	F	Q	T	I	A	S	G	G	.	N	R	A	P	L	S	A	L	R	S	V	I	A	E	D	G	K	V	L	Y	Q	S	F	P	Q	A	E	R	A	V	P	A	Q	A	A	Y	L	T	L	W	T	X	Q	Q	V	V	Q	R	G	T	G	R	Q	L	G	A	K	Y	P	N	L	H	L	A	G	K
Template Known Secondary structure												T	T	S	.						B	S							S	S	S														S																		T	S	T	T								T	T	S
Template Predicted Secondary structure															.
Template SS confidence
		620	.	.	.	.	.	.	.	.	.	630	.	.		.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	H	T	S	G	A	G	F	N	L	I	A	S	A	V	D	G	Q	R	R	L	I	A	V	V	M	G	A	D	S	A	K
Query Conservation
Alig confidence																	.	.
Template Conservation																	.	.
Template Sequence		T	G	T	T	N	N	N	V	D	T	W	F	A	G	I	.	.	D	G	S	T	V	T	I	T	W	V	G	R	D	N	N	Q
Template Known Secondary structure						G	G	G	S								.	.		S	S										T	T
Template Predicted Secondary structure																	.	.
Template SS confidence
		699	700	.	.	.	.	.	.	.	.	.	710	.	.	.			.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions