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Job DescriptionP33013
Confidence100.00%DateThu Jan 5 11:50:49 GMT 2012
Rank21Aligned Residues231
% Identity16%Templatec3dw0B_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:class a carbapenemase kpc-2; PDBTitle: crystal structure of the class a carbapenemase kpc-2 at 1.62 angstrom resolution
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50.........60.........70.........80.........90.........100.........110.......
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Query Sequence  SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVS
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Template Sequence  GVYAMDTGSGATV. SYRAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVP. . . . . . WSPISEKYLTTGMT
Template Known Secondary structure  TTT

.STTS

GGGTTSTTTTT



GGG

S......S
TTTT
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   45....50....... ..60.........70.........80.........90.........100... ......110.......
 
   118.120.........130.........140.........150.........160....... ..170.........180.........190.
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Query Sequence  VRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFE. . . . . . TVHGLDAPGQHSSAYDLAVLSRAI
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Template Sequence  VAELSAAAVQYSDNAAANLLLKELGG. . . . . PAGLTAFMRSIGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESLQKL
Template Known Secondary structure 

TT.....TT
SS
B



TTGGG


TT

TT
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   119120.........130.........140.... .....150.........160.........170.........180.........190...
 
   192.......200.........210.........220......... 230.........240 ......... 250.........260.......
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Query Sequence  IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVD. GLKTGHTSGAG. FNLIASAVD. GQRRLIAVVMGADSAKGR.
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Template Sequence  TL. GSALAAPQRQQFVDWLKGNTTGNHRIRAAVPADWAVGDKTGTCGVYGTANDYAVVWPTGRAPIVLAVYTRAPNKDDK
Template Known Secondary structure  T.SSSS
T
SS
TTTGGGGS
TTS
SSTT

TTS


SSTT

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   194. ....200.........210.........220.........230.........240.........250.........260.........270..
 
   268.270.........280.
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Query Sequence  . . . . . EEEARKLLRWGQQN
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Template Sequence  HSEAVIAAAARLALEGLGV
Template Known Secondary structure 

TT
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   274.....280.........290..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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