Return to main results Retrieve Phyre Job Id

Job DescriptionP33013
Confidence100.00%DateThu Jan 5 11:50:49 GMT 2012
Rank26Aligned Residues223
% Identity15%Templatec3cjmA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:putative beta-lactamase; PDBTitle: crystal structure of putative beta-lactamase (np_815223.1) from2 enterococcus faecalis v583 at 1.50 a resolution
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50.........60.........70.........80.........90.........100.........110.......
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVS
Query Conservation 



 
  

 

  

       

 





   
  
  
   
   
 

             

   
  
   
Alig confidence 











.















































.....













Template Conservation 

 
 

 

  .   
       

  

 
    
     
   
   
          .....         
   
Template Sequence  GISYLDLETGEQ. RSVNGQHEFYTASTIKVPLTXLVADTVASGQKKWTDLIPYNAEEDYEE. . . . . GTGIIAYNIQPEYP
Template Known Secondary structure  TTT

.STT


GGGGTTS

TT





.....SS
SGGGS

S
Template Predicted Secondary structure 




.




















.....













Template SS confidence 















































































   84.....90..... ....100.........110.........120.........130.........140... ......150.......
 
   118.120.........130.........140.........150.........160.........170.........180.........190.....
Predicted Secondary structure 

























..
Query SS confidence 













































































. .
Query Sequence  VRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGE. .
Query Conservation 
 


 
 

 
 



  

  
 

   

  

  
  

   
 
 

 

      


 


 
        ..
Alig confidence 










































............






















..
Template Conservation 
  
   

  


 


 
   


                 ............    
 

  
 
 

  
      
Template Sequence  LKTLQEYAITYSDNIAKNXLYDTLGGDAKAKREXYQRYLHKTP. . . . . . . . . . . . SIEEPQFSSEDALVILQKLYTEKAT
Template Known Secondary structure  T

TT
TS


............
SSS

TTT
Template Predicted Secondary structure 








............












Template SS confidence 















































































   158.160.........170.........180.........190.........200 .........210.........220.....
 
   196...200.........210.........220.........230.........240.........250.........260........ .270
Predicted Secondary structure  .





















....
Query SS confidence  .








































































. . . .

Query Sequence  . PEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGRE. . . . EE
Query Conservation  .
    
              
 
 

      
 
 


 
  

   
  
   
   
 



      
 .... 
Alig confidence  .














......






















.



























....

Template Conservation                  ......       

   
  


     .  
 


     


 
             
  
Template Sequence  KPDYQAIYDSXKQSVF. . . . . . HERXETPTTQGKVAHKIGSYDEF. IHDXGILETPHPFALAIFTKGPDNAKSAAFIASV
Template Known Secondary structure 
S
S
......

TT

TTTTTSTT.
SSS

S
Template Predicted Secondary structure 




......











.







Template SS confidence 















































































   226...230.........240. ........250.........260.... .....270.........280.........290........
 
   271........280.....
Predicted Secondary structure 

Query SS confidence 














Query Sequence  ARKLLRWGQQNFTTV
Query Conservation     

   
      
Alig confidence 














Template Conservation 
  
           
Template Sequence  TDKLWQLQVSEYPNQ
Template Known Secondary structure  S



Template Predicted Secondary structure 




Template SS confidence 














   299300.........310...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions