Job Description P33013 Confidence 99.08% Date Thu Jan 5 11:50:49 GMT 2012 Rank 60 Aligned Residues 231 % Identity 20% Template c2wadB_ PDB info PDB header:peptide binding protein Chain: B: PDB Molecule:penicillin-binding protein 2b; PDBTitle: penicillin-binding protein 2b (pbp-2b) from streptococcus2 pneumoniae (strain 5204) Resolution 2.18 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.																		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	Q	P	P	E	I	H	A	G	S	W	V	L	M	D	Y	T	T	G	Q	I	L	T	A	G	N	E	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	Q	R	N	P	A	S	L	T	K	L	M	T	G	Y	V	V	D	R	A	I	D	S	H	R	I	T	P	D	D	I	V	T	V	G
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.													.
Template Conservation																																																																		.	.	.													.
Template Sequence		G	G	A	K	Y	S	E	G	V	Y	A	V	A	L	N	P	Q	T	G	A	V	L	S	M	S	G	L	K	H	D	L	K	T	G	E	L	T	P	D	S	L	G	T	V	T	N	V	F	V	P	G	S	V	V	K	A	A	T	I	S	S	G	W	E	.	.	.	N	G	V	L	S	G	N	Q	T	L	T	D	.
Template Known Secondary structure		S	T	T	T	T											T	T	T		B											T	T	T							T	T							B			G	G	G	G											.	.	.	T	T	S			S	S						.
Template Predicted Secondary structure																																																																		.	.	.													.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.				.	400	.	.	.	.	.	.	.	.	.	410
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.						.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.													.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	D	A	W	A	K	D	N	P	V	F	V	G	S	S	L	M	F	L	K	E	G	D	.	.	.	.	.	R	V	S	V	R	D	L	S	R	G	L	I	V	D	S	G	N	D	A	C	V	A	L	A	D	Y	I	A	G	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	R	Q	F	V	E	M	M	N	N
Query Conservation																									.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																		.	.	.	.	.											.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																	.	.	.	.
Template Sequence		.	.	.	.	.	.	Q	P	I	V	F	Q	G	S	A	P	I	Y	S	W	Y	K	L	A	Y	G	S	F	P	I	T	A	V	E	A	L	E	Y	.	.	.	.	S	S	N	A	Y	V	V	Q	T	A	L	G	I	M	G	Q	T	Y	Q	P	N	M	F	V	G	T	S	N	L	E	S	A	M	G	K	L	R	S
Template Known Secondary structure		.	.	.	.	.	.			B		B	T	T	S			B			T	T	T	T	T	T		S												.	.	.	.	T													T	T					T	T	B					T	T
Template Predicted Secondary structure		.	.	.	.	.	.																																	.	.	.	.
Template SS confidence
								411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.					.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.																								.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.					.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.														.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.														.
Query Sequence		Y	A	E	K	L	H	L	K	D	T	H	F	E	T	V	H	G	L	D	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	H	S	S	A	Y	D	L	A	V	L	S	R	A	I	I	H	.	.	.	.	G	E	P	E	F	Y	H	M	Y	S	E	K	S	.
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.														.
Alig confidence											.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.														.
Template Conservation											.	.	.	.	.
Template Sequence		T	F	G	E	Y	G	L	G	S	.	.	.	.	.	A	T	G	I	D	L	P	D	E	S	T	G	L	V	P	K	E	Y	N	F	A	N	F	I	T	N	A	F	G	Q	F	D	N	Y	T	P	M	Q	L	A	Q	Y	V	A	T	I	A	N	N	G	V	R	L	A	P	H	I	V	E	G	I	Y	D	N	N	D
Template Known Secondary structure					T	T	T	T	T	S	.	.	.	.	.					S	S	S						B			S	S										T	T	T	S	S	S	B	B														T	T	T						B	S									T
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		481	.	.	.	.	.	.	.	.						490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
										207	.	.	210	.	.	.	.	.																											.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	L	T	W	N	G	I	T	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	N	G	L	L	W	D	K	T	M	N	V	D	G	L	K	T	G	H	T	S	G	A	G	F	N	L	I	A	S	A	V	D	G	Q	R
Query Conservation		.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Template Conservation																																																																			.	.	.	.
Template Sequence		K	G	G	L	G	E	L	I	Q	A	I	D	T	K	E	I	N	K	V	N	I	S	E	S	D	M	A	I	L	H	Q	G	F	Y	Q	V	S	H	G	T	S	P	L	T	T	G	R	A	F	S	D	G	A	T	V	S	I	S	G	K	T	G	T	N	T	.	.	.	.	N	A	V	A	Y	A	P	T	E	N	P
Template Known Secondary structure		T	S	S																	S	S																				S	T	T				G	G	G	T	T	T		S	S											.	.	.	.							S	T	T	S
Template Predicted Secondary structure																																																																			.	.	.	.
Template SS confidence
		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620					.	.	.	.	.	.	.	.	.	630	.
		253	.	.	.		.	.	.	260	.	.				.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure						.							.	.	.
Query SS confidence						.							.	.	.
Query Sequence		R	L	I	A	.	V	V	M	G	A	D	.	.	.	S	A	K	G	R	E	E	E	A	R	K	L	L	R	W	G	Q	Q	N	F
Query Conservation						.							.	.	.
Alig confidence						.							.	.	.
Template Conservation
Template Sequence		Q	I	A	V	A	V	V	F	P	H	N	T	N	L	T	K	N	V	G	P	A	I	A	R	D	I	I	N	L	Y	N	Q	H	H
Template Known Secondary structure										T	T				S	S																			S
Template Predicted Secondary structure
Template SS confidence
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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