Job Description P33013 Confidence 99.02% Date Thu Jan 5 11:50:49 GMT 2012 Rank 66 Aligned Residues 232 % Identity 18% Template c2qmiH_ PDB info PDB header:hydrolase Chain: H: PDB Molecule:pbp related beta-lactamase; PDBTitle: structure of the octameric penicillin-binding protein2 homologue from pyrococcus abyssi Resolution 2.20 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.														.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	H	A	G	S	W	V	L	M	D	Y	T	T	G	Q	I	L	T	A	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	E	H	Q	Q	R	N	P	A	S	L	T	K	L	M	T	G	Y	V	V	D	R	A	I	D	S	H	R	I	T	P	D	D	I	V	T	V	G	R	D	A	W	A	K	D	N
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.										.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation													.	.																																																									.	.	.	.	.	.	.	.	.
Template Sequence		K	V	P	G	I	S	I	S	I	I	K	.	.	D	G	D	V	V	Y	A	K	G	F	G	Y	R	N	V	E	A	R	L	P	S	T	P	E	T	I	Y	G	I	G	S	I	T	K	S	F	T	A	L	A	I	M	K	L	V	E	E	G	G	L	S	L	D	D	P	V	.	.	.	.	.	.	.	.	.	E	K
Template Known Secondary structure		T											.	.	T	T													T	T	T	T					T	T		B				G	G	G															T	T	S			T	T	S	B	G	.	.	.	.	.	.	.	.	.	G	G
Template Predicted Secondary structure													.	.																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.										.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.																																																	.	.	.	.	.	.	130	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	F	V	G	S	S	L	M	F	L	K	E	G	D	R	V	S	V	R	D	L	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	I	V	D	S	G	N
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.
Template Sequence		F	V	N	I	.	.	.	.	K	L	R	P	F	G	E	P	V	T	V	H	H	L	L	T	H	S	S	G	I	P	S	L	G	Y	A	E	A	F	I	D	G	M	V	G	G	D	N	W	L	P	V	S	T	P	E	E	T	I	A	F	A	R	D	M	E	K	W	A	V	A	K	P	G	E	R	F	F	Y	L	N
Template Known Secondary structure		T	S	S	S	.	.	.	.				G	G	G				B						T	T		S	S														T	T	T		S							S								G	G	G	G	G	G	G			S		T	T	T
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
		87	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		132	.	.	.	.	.	.	.	140	.	.					.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.																												.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure													.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	C	V	A	L	A	D	Y	I	A	.	.	.	.	G	G	Q	R	Q	F	V	E	M	M	N	N	Y	A	E	K	L	H	L	K	D	T	H	F	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	H	G	L	D	A	P	G	Q	H	S	S
Query Conservation													.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.									.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.
Template Sequence		T	G	Y	V	L	L	G	K	I	I	E	K	V	S	G	V	S	Y	E	E	Y	I	K	.	.	K	K	I	L	E	P	L	G	M	N	R	S	Y	F	F	K	E	E	V	E	K	D	K	D	V	A	M	G	Y	I	L	D	K	E	G	R	L	V	P	Q	P	F	P	Y	G	I	T	A	D	G	G	L	L	S	S
Template Known Secondary structure																S	S								.	.			T	T	G	G	G	T		T	T		B							T	T	S	S	S	B								T	T	S									T	T			T	T	T
Template Predicted Secondary structure																									.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.								.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.
Query Sequence		A	Y	D	L	A	V	L	S	R	A	I	I	H	G	E	P	E	F	Y	H	M	Y	S	E	K	S	L	T	W	N	G	I	T	Q	Q	N	R	N	G	L	L	W	D	K	T	M	N	V	D	G	L	K	T	.	.	.	.	.	.	.	G	H	T	S	G	A	G	F	N	L	I	A	S	A	V	D	G	Q	R	R
Query Conservation																																																							.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	D	L	A	K	Y	L	K	M	Y	I	E	R	D	E	S	I	V	S	K	E	Y	I	E	K	M	E	T	S	Y	I	K	V	P	W	E	I	F	G	G	E	G	Y	G	Y	G	L	I	I	Y	P	N	F	L	G	E	K	L	V	G	H	S	G	S	V	G	M	Y	T	G	Y	I	G	Y	I	P	E	K	K
Template Known Secondary structure														T	T			S	S	S									T	S						S			S	S	S						S	S	S							T	T											S	S									G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	A	V	V	M	G	A	D	S	A	K	G	R	E	E	E	A	R	K	L	L	R	W	G	Q	Q	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	V	A	V	L	E	N	S	S	G	Y	P	P	S	Y	I	A	M	Y	A	L	A	L	L	L	G	K
Template Known Secondary structure									S	S	S	S	S															T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions