Job Description P33013 Confidence 97.85% Date Thu Jan 5 11:50:49 GMT 2012 Rank 96 Aligned Residues 141 % Identity 23% Template c2jciA_ PDB info PDB header:drug-binding protein Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: structural insights into the catalytic mechanism and the2 role of streptococcus pneumoniae pbp1b Resolution 2.5 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.													.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	W	V	L	M	D	Y	T	T	G	Q	I	L	T	A	G	N	E	.	.	.	.	.	.	.	.	.	.	.	.	H	Q	Q	R	N	P	A	S	L	T	K	L	M	T	G	Y	V	V	D	R	A	I	D	S	H	R	I	T	P	D	D	I	V	T	V	G	R	D	A	W	A	K	D	N	P	V	F	V	G	S
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																																																		.	.
Template Sequence		G	N	V	L	M	D	N	Q	T	G	A	I	L	G	F	V	G	G	R	N	Y	Q	E	N	Q	N	N	H	A	F	D	T	K	R	S	P	A	S	T	T	K	P	L	L	A	Y	G	I	.	.	A	I	D	Q	G	L	M	G	S	E	T	I	L	S	N	Y	P	T	N	F	A	N	G	N	P	I	M	Y	A	N
Template Known Secondary structure								T	T	T		B								S		T	T	T					T	T	T	T			B			G	G	G	G					T				.	.				T	T	S			T	T						S			B		T	T	S		B			B	T	T
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470			.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		S	L	M	F	L	K	E	G	D	R	V	S	V	R	D	L	S	R	G	L	I	V	D	S	G	N	D	A	C	V	A	L	A	D	Y	I	A	G	G	Q	R	Q	F	V	E	.	.	M	M	N	N	Y	A	E	K	L	H	L	K	D	T	H	F	E	T	V	H	G	L	D	A	P	G	Q	H	S	S	A	Y	D
Query Conservation																																															.	.
Alig confidence						.	.	.	.										.	.	.	.																	.	.	.	.	.	.			.	.
Template Conservation						.	.	.	.										.	.	.	.																	.	.	.	.	.	.
Template Sequence		S	K	G	T	.	.	.	.	G	M	M	T	L	G	E	A	L	.	.	.	.	N	Y	S	W	N	I	P	A	Y	W	T	Y	R	M	L	R	.	.	.	.	.	.	E	N	G	V	D	V	K	G	Y	M	E	K	M	G	Y	E	I	P	E	Y	G	I	E	S	L	P	M	G	G	G	I	E	V	T	V	A	Q
Template Known Secondary structure		B				.	.	.	.	S									.	.	.	.			T		S												.	.	.	.	.	.		T	T										T	T				S					T	T	G	G	G	T	T	T			B
Template Predicted Secondary structure						.	.	.	.										.	.	.	.																	.	.	.	.	.	.
Template SS confidence
		501	.	.	.					.	.	.	.	.	510	.	.	.					.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.							530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	V	L	S	R	A	I	I	H	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	T	N	G	Y	Q	T	L	A	N	N
Template Known Secondary structure											T	T
Template Predicted Secondary structure
Template SS confidence
		567	.	.	570	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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