Job Description P33013 Confidence 99.55% Date Thu Jan 5 11:50:49 GMT 2012 Rank 50 Aligned Residues 201 % Identity 12% Template c2iwdA_ PDB info PDB header:antibiotic resistance Chain: A: PDB Molecule:methicillin resistance mecr1 protein; PDBTitle: oxacilloyl-acylated mecr1 extracellular antibiotic-sensor2 domain. Resolution 2.4 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		S	W	V	L	M	D	Y	T	T	G	Q	I	L	.	T	A	G	N	E	H	Q	Q	R	N	P	A	S	L	T	K	L	M	T	G	Y	V	V	D	R	A	I	D	S	H	R	I	T	P	D	D	I	V	T	V	G	R	D	A	W	A	K	D	N	P	V	F	V	G	S	S	L	M	F	L	K	E	G	D	R	V
Query Conservation															.
Alig confidence															.																										.	.	.											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	F	V	L	Y	N	E	R	E	Q	A	Y	S	I	Y	N	E	P	E	S	K	Q	R	Y	S	P	N	T	Y	K	I	Y	L	A	L	M	A	F	D	.	.	.	Q	N	L	L	S	L	N	H	T	E	.	.	.	.	.	.	.	.	.	.	.	Q	Q	W	D	K	H	Q	Y	P	F	K	E	W	N	Q	D	Q
Template Known Secondary structure								T	T	T	T						S						B							T											.	.	.	T	T	S	S	B	T	T	B			.	.	.	.	.	.	.	.	.	.	.	B								S	S	G	G	G	S	S		B
Template Predicted Secondary structure																																									.	.	.											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.				.	.	.	.	.	.	.	410	.	.												.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																																																						.																											.
Query SS confidence																																																						.																											.
Query Sequence		S	V	R	D	L	S	R	G	L	I	V	D	S	G	N	D	A	C	V	A	L	A	D	Y	I	A	G	G	Q	R	Q	F	V	E	M	M	N	N	Y	A	E	K	L	H	L	K	D	T	H	F	E	T	.	V	H	G	L	D	A	P	G	Q	H	S	S	A	Y	D	L	A	V	L	S	R	A	I	I	H	G	.
Query Conservation																																																						.																											.
Alig confidence							.	.	.	.																		.	.	.	.	.	.																					.																											.
Template Conservation							.	.	.	.																		.	.	.	.	.	.
Template Sequence		N	L	N	S	S	.	.	.	.	M	K	Y	S	V	N	W	Y	Y	E	N	L	N	K	H	L	R	.	.	.	.	.	.	Q	D	E	V	K	S	Y	L	D	L	I	E	Y	G	N	E	E	I	S	G	N	E	N	Y	W	N	E	S	S	L	K	I	S	A	I	E	Q	V	N	L	L	K	N	M	K	Q	H	N
Template Known Secondary structure							.	.	.	.			T	T												S		.	.	.	.	.	.												T		T	T					S		T	T	T	T	S	S	S	S																	T	T
Template Predicted Secondary structure							.	.	.	.																		.	.	.	.	.	.
Template SS confidence
		431	.	.	.	.					.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.							.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
					195	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.					260	.
Predicted Secondary structure		.	.	.										.	.																																								.	.	.	.																		.	.	.	.
Query SS confidence		.	.	.										.	.																																								.	.	.	.																		.	.	.	.
Query Sequence		.	.	.	E	P	E	F	Y	H	M	Y	S	.	.	E	K	S	L	T	W	N	G	I	T	Q	Q	N	R	N	G	L	L	W	D	K	T	M	N	V	D	G	L	K	T	G	H	T	S	G	A	G	F	N	.	.	.	.	L	I	A	S	A	V	D	G	Q	R	R	L	I	A	V	V	M	.	.	.	.	G	A
Query Conservation		.	.	.										.	.																																								.	.	.	.																		.	.	.	.
Alig confidence		.	.	.										.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.																		.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	H	F	D	N	K	A	I	E	K	V	E	N	S	M	T	L	K	Q	K	D	T	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	V	G	K	T	G	T	G	I	V	N	H	K	E	A	N	G	W	F	V	G	Y	V	E	T	K	D	N	T	Y	Y	F	A	T	H	L	K	G	E	D	N
Template Known Secondary structure		S	S	S												T						S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T														S	S												S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.																.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	A	K	G	R	E	E	E	A	R	K	L	L	R	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	N	G	E	K	A	Q	Q	I	S	E	R	I	L	K	E
Template Known Secondary structure		B	S
Template Predicted Secondary structure
Template SS confidence
		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions