Job Description P33013 Confidence 100.00% Date Thu Jan 5 11:50:49 GMT 2012 Rank 6 Aligned Residues 327 % Identity 25% Template c1tvfA_ PDB info PDB header:penicillin binding Chain: A: PDB Molecule:penicillin binding protein 4; PDBTitle: crystal structure of penicillin-binding protein 4 (pbp4)2 from staphylococcus aureus Resolution 2.00 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	F	A	A	E	N	I	P	F	S	P	Q	P	P	E	I	H	A	G	S	W	V	L	M	D	Y	T	T	G	Q	I	L	T	A	G	N	E	H	Q	Q	R	N	P	A	S	L	T	K	L	M	T	G	Y	V	V	D	R	A	I	D	S	H	R	I	T	P	D	D	I	V	T	V	G	R	D	A	W	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	V	Q	A	A	N	Q	Y	G	Y	A	G	L	S	A	A	Y	E	P	T	S	A	V	N	V	S	Q	T	G	Q	L	L	Y	Q	Y	N	I	D	T	K	W	N	P	A	S	M	T	K	L	M	T	M	Y	L	T	L	E	A	V	N	K	G	Q	L	S	L	D	D	T	V	T	M	T	N	K	E	Y	I	M
Template Known Secondary structure										T	T		T	T			G	G	G			S							T	T	S	B						S	T	T			B			G	G	G															T	T	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		D	N	P	V	F	V	G	S	S	L	M	F	L	K	E	G	D	R	V	S	V	R	D	L	S	R	G	L	I	V	D	S	G	N	D	A	C	V	A	L	A	D	Y	I	A	G	G	Q	R	Q	F	V	E	M	M	N	N	Y	A	E	K	L	H	L	K	D	T	H	F	E	T	V	H	G	L	D	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence			.	.																																																																										.	.	.	.
Template Conservation			.	.
Template Sequence		S	.	.	T	L	P	E	L	S	N	T	K	L	Y	P	G	Q	V	W	T	I	A	D	L	L	Q	I	T	V	S	N	S	S	N	A	A	A	L	I	L	A	K	K	V	S	K	N	T	S	D	F	V	D	L	M	N	N	K	A	K	A	I	G	M	K	N	T	H	F	V	N	P	T	G	A	E	N	S	R	L
Template Known Secondary structure		T	.	.	T		T	T	S							T	T															S														S	S	S															T	T		T	T		B		S	S	S	S	S	S
Template Predicted Secondary structure			.	.
Template SS confidence
		110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
												174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.				.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																			.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																																			.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	A	P	G	Q	H	S	S	A	Y	D	L	A	V	L	S	R	A	I	I	H	G	E	P	E	F	Y	H	M	Y	S	E	K	S	L	T	W	N	G	I	T	Q	Q	N	R	N	G	L	L	W	D	.	.	.	K	T	M	N	V	D	G	L	K	T	G	H	T	S	G	A	G
Query Conservation		.	.	.	.	.	.	.	.	.	.																																																			.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																			.	.	.
Template Conservation
Template Sequence		R	S	F	A	P	T	K	Y	K	D	Q	E	R	T	V	T	T	A	R	D	Y	A	I	L	D	L	H	V	I	K	E	T	P	K	I	L	D	F	T	K	Q	L	A	P	T	T	H	A	V	T	Y	Y	T	F	N	F	S	L	E	G	A	K	M	S	L	P	G	T	D	G	L	K	T	G	S	S	D	T	A	N
Template Known Secondary structure		G	G	G	S		G	G	G	T	T					B	B																	T	T						T		S	S				T	T								T	T	S	T	T	S	T	T			T	T										T	T	T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.							.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.				.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																								.	.	.	.	.	.																																	.	.	.
Query SS confidence																								.	.	.	.	.	.																																	.	.	.
Query Sequence		F	N	L	I	A	S	A	V	D	G	Q	R	R	L	I	A	V	V	M	G	A	D	.	.	.	.	.	.	S	A	K	G	R	E	E	E	A	R	K	L	L	R	W	G	Q	Q	N	F	T	T	V	Q	I	L	H	R	G	K	K	V	.	.	.	G	T	E	R	I	W	Y	G	D	K	E	N	I	D	L	G	T
Query Conservation																								.	.	.	.	.	.																																	.	.	.
Alig confidence																								.	.	.	.	.	.																																	.	.	.
Template Conservation
Template Sequence		Y	N	H	T	I	T	T	K	R	G	K	F	R	I	N	Q	V	I	M	G	A	G	D	Y	K	N	L	G	G	E	K	Q	R	N	M	M	G	N	A	L	M	E	R	S	F	D	Q	Y	K	Y	V	K	I	L	S	K	G	E	Q	R	I	N	G	K	K	Y	Y	V	E	N	D	L	Y	D	V	L	P	S	D	F
Template Known Secondary structure											T	T											S	B	T	T	T	T	B																												S						T	T							S								T	T
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		E	Q	E	F	W	M	V	L	P	K	A	E	I	P	H	I	K	A	K	Y	T	L	D	G	K	E	L	T	A	P	.	I	S	A	H	Q
Query Conservation																																.
Alig confidence																																.
Template Conservation
Template Sequence		S	K	K	D	Y	K	L	V	V	E	D	G	K	V	H	A	D	Y	P	R	E	F	I	N	K	D	Y	G	P	P	T	V	E	V	H	Q
Template Known Secondary structure			G	G	G							T	T							S			B	S	S	T	T			S
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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