Job Description P07639 Confidence 21.74% Date Thu Jan 5 11:00:23 GMT 2012 Rank 298 Aligned Residues 74 % Identity 15% Template c3cuqA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Resolution 2.61 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.														.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																			.												.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Query SS confidence																			.												.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Query Sequence		S	S	A	E	T	Q	R	I	I	T	L	L	K	R	A	G	L	.	P	V	N	G	P	R	E	M	S	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	L	P	H	M	L	R	D	K	K	V	L	A	G	E	M	R	L	I	L	P	L	A	I	G	K	S	E	V	R	S	G	.	.	.	.	.
Query Conservation																			.												.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Alig confidence																			.												.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.														.	.	.	.	.
Template Conservation																																																														.	.
Template Sequence		N	P	E	F	R	V	Q	F	Q	D	M	C	A	T	I	G	V	D	P	L	A	S	G	K	G	F	W	S	E	M	L	G	V	G	D	F	Y	Y	E	L	G	V	Q	I	I	E	V	C	L	A	L	K	H	R	N	G	G	L	I	T	.	.	L	E	E	L	H	Q	Q	V	L	K	G	R	G	K	F	A	Q	D
Template Known Secondary structure																	T			T	T	S		T	T	S																															S	S				.	.											T	T	T	T			S	S
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	H	E	L	V	L	N	A	I	A	D	C	Q	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	Q	D	D	L	I	R	A	I	K	K	L	K	A
Template Known Secondary structure															G	G
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions