 |
Job Description | P07639 | Confidence | 58.31% | Date | Thu Jan 5 11:00:23 GMT 2012 |
Rank | 135 | Aligned Residues | 110 |
% Identity | 17% | Template | c2nu9E_ |
PDB info |
PDB header:ligase | Chain: E: PDB Molecule:succinyl-coa synthetase beta chain; |
PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form
|
Resolution | 2.90 Å |
|
 |
  |   |
15 | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | |
|
. | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | T | I | A | S | G | L | F | N | E | P | A | S | F | L | P | L | K | S | G | E | . |
. |
Q | V | M | L | V | T | N | E | T | L | A | P | L | Y | L | D | K | V | R | G | V | L | E | Q | A | G | V | N | V | D | S | V | I | L | P | D | G | E | Q | Y | K | S | L | A | V | L | D | T | V | F | T | A | L | L | Q | K | P |
Query Conservation |   |
|   |
|
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   | . | . |
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|
|   |   |
|   |
|   |
|   |
|   |   |   |
|
|   |
|
|
|   |   |
|
|
|
|   |
|   |   |
|   |   |   |   |
|
|   |
|   |
|   |
|   |   |
|   |   |
|
|
|   |
|   |
|
|
| . |   |   |   |   |   |
|
|   |   |
|
|   |
|   |   |   |   |   |
Template Sequence |   |
M | V | N | G | A | G | L | A | M | G | T | M | D | I | V | K | L | H | G | G | E | P | A | N | F | L | D | V | G | G | G | A | T | K | E | R | V | T | E | A | F | K | I | I | L | S | D | D | K | V | K | A | V | L | V | N | I | F | G | G | I | . |
V | R | C | D | L | I | A | D | G | I | I | G | A | V | A | E | V | G |
Template Known Secondary structure |   |
 |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| B |
|  |  |  |  |  |
| S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | S | T | T |
|
|  |  |  |  |  |  |  |
| T | T | . | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
262 | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | |
. | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 |
  |
  |   |
93 | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | G | R | D | T | T | L | V | A | L | G | G | G | V | V | G | D | L | T | G | F | A | A | A | S | Y | Q | R | G | V | R | F | I | Q | V | P | T |
Query Conservation |   |
  |   |   |   |
|   |
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |   |
|   |   |   |   |   |
|   |
|   |
|   |
|
|
|
Alig confidence |   |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
| . |
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |   | . | . | . |
|
|
|   |   |   |   |   |   |
Template Sequence |   |
V | N | V | P | . |
V | V | V | R | L | E | G | N | N | A | E | L | G | A | K | K | L | A | D | S | . |
. |
. |
G | L | N | I | I | A | A | K | G |
Template Known Secondary structure |   |
|
| S |
| . |  |  |  |  |  |  | S | T | T |  |  |  |  |  |  |  |  |  |  | S | . | . | . |
| S | S |  |  |  |
| S | S |
Template Predicted Secondary structure |   |
|
|
|  | . |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|
|
|  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
341 | . | . | . | |
. | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | |
|
|
. | . | . | . | . | 370 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|