Job Description P07639 Confidence 34.30% Date Thu Jan 5 11:00:23 GMT 2012 Rank 209 Aligned Residues 138 % Identity 11% Template c2dg2D_ PDB info PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein Resolution 2.45 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.									.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																		.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.
Query Sequence		S	G	L	F	N	E	P	A	S	F	L	P	L	K	S	G	.	.	.	.	.	.	.	.	E	Q	V	M	L	V	T	N	E	T	L	A	P	L	Y	L	D	K	V	R	G	V	L	E	Q	A	G	V	N	V	D	S	V	I	L	P	D	G	E	Q	Y	K	S	L	A	V	L	D	T	V	F	T	A	L	L	Q
Query Conservation																		.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.																																									.	.	.	.
Template Conservation																																																																		.	.	.	.
Template Sequence		E	L	A	G	L	S	C	A	T	A	I	A	K	A	Y	P	P	T	S	X	S	K	S	P	P	T	V	L	V	I	C	G	P	G	N	N	G	G	D	G	L	V	C	A	R	H	L	K	L	F	G	Y	Q	P	T	I	Y	Y	P	K	R	P	N	K	.	.	.	.	P	L	F	T	G	L	V	T	Q	C	Q	K
Template Known Secondary structure																S		G	G	G	S	S	S	S	S									S	S																T	T								S	S				S	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.					.	120	.	.	.	.	.	.	.	.	.	130
		91	.	.	.															.	.	.	.	.	100							.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.																												.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.																												.	.
Query Sequence		K	P	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	T	T	L	V	.	.	.	.	.	.	A	L	G	G	G	V	V	G	D	L	T	G	F	A	A	A	S	Y	Q	R	G	V	R	F	I	Q	V	.	.	P	T	T	L	L	S	Q	V	D	S	S	V	G	G	K	T	A	V	N	H	P
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.																												.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.																												.	.
Template Conservation
Template Sequence		X	D	I	P	F	L	G	E	X	P	P	E	P	X	X	V	D	E	L	Y	E	L	V	V	D	A	I	F	G	F	S	F	K	G	D	V	R	E	P	F	H	S	I	L	S	V	L	S	G	L	T	V	P	I	A	S	I	D	I	P	S	G	W	D	V	E	K	G	N	P	S	G	I	Q	P	D	L	L	I	S
Template Known Secondary structure		T	T			B		S	S			S	S									S						S			T	T							T	T									T	T		S	S							.		T	T	S	B	T	T	T	B		T	T	S				S
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		149	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	K	N	M	I	G	A	F	Y	Q	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	A	P	K	K	S	A	T	H	F	T
Template Known Secondary structure			S	S		B	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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