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Job DescriptionP33916
Confidence100.00%DateThu Jan 5 11:52:44 GMT 2012
Rank7Aligned Residues475
% Identity27%Templatec2ygrD_
PDB info PDB header:hydrolaseChain: D: PDB Molecule:uvrabc system protein a; PDBTitle: mycobacterium tuberculosis uvra
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.. .......60......... 70.........80.
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Query Sequence  VNDVSLQIEAGETLALVGESGSGKSVTA. . . . . . . . . . . . . . . . . . . . LSILRLLPSPPVEYLSG. . . DIRFHGESLLHA
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Template Sequence  LRSVDLDLPRDALIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLGQMDKPDVDFIEGLSPAVSIDQKSTNRN
Template Known Secondary structure 

SSSS
STTSSTTTTTT
STTTS




SS



S





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   15....20.........30.........40.........50.........60.........70.........80.........90....
 
   82.......90.
Predicted Secondary structure  ......
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Query Sequence  . . . . . . SDQTLRGVRG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ......          ................................................................
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Template Sequence  PRSTVGTITEVYDYLRLLYARAGTPHCPTCGERVARQTPQQIVDQVLAMPEGTRFLVLAPVVRTRKGEFADLFDKLNAQG
Template Known Secondary structure  TT
BTTSSB
B
TTT

B
B


SS

SS


SSSSB
S
TTS
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   95....100.........110.........120.........130.........140.........150.........160.........170....
 
  
Predicted Secondary structure  ................................................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation       
      
     
          
    
       
                                     
Template Sequence  YSRVRVDGVVHPLTDPPRARRQEKHDIEVVVDKRRLTDSVETALNLADGIVVLEFVDHRFSEKLACPNGHALAVDDLEPR
Template Known Secondary structure 
S
BSSS
B
TTS




TTS
B




SSS







TTBB
TT



S
S


GG
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   175....180.........190.........200.........210.........220.........230.........240.........250....
 
   92....... 100...
Predicted Secondary structure  ..............


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Query Sequence  . . . . . . . . . . . . . . NKIAMIFQ. . . . . . . . EPMV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ..............  
  
 
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Template Conservation   

 

  
 
  
 
 
     
    
     
   

                              
       

Template Sequence  SFSFNSPYGACPDCSGLGIRKEVDPELVVPDPDRTLAQGAVAPWSNGHTAEYFTRMMAGLGEALGFDVDTPPAKARKAIL
Template Known Secondary structure  GG
TTSTTTBBTTBSSS


SS

SSSSS
S
STT
SSTTS

SS


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   272.......280.........290.........300.........310.........320.........330.........340.........350.
 
   104..
Predicted Secondary structure  .............................................................................

Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .


Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SLN
Query Conservation  ............................................................................. 
 
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Template Conservation   
                          
  
               
        
  
 
 

   

      
   
Template Sequence  EGADEQVHVRYRNRYGRTRSYYADFEGVLAFLQRKMSQTESEQMKERYEGFMRDVPCPVCAGTRLKPEILAVTLKSIAEV
Template Known Secondary structure  T


S





SSS









S
TTTT
TTTTTS
B
T
B

GGG

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   356...360.........370.........380.........390.........400.........410.........420.........430.....
 
   107..110.........120.........130....... ..140.........150.........160.........170...... .
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Query Sequence  PLHTLEKQLYEVLSLHRGMRREAARGEILNC. . . . . . . LDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPE. . L
Query Conservation                                 .......
    
      
      








 

 

   
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Template Sequence  CELSIADCADFLNALTLGPREQAIAGQVLKEIRSRLGFLLDVGLEYLS. . LSRAAATLSGGEAQRIRLATQIGSGLVGVL
Template Known Secondary structure 
TT

TTSTT
TTS
..TTSBGGG

TT


S
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   446...450.........460.........470.........480.........490... ......500.........510.........520...
 
   178.180.........190.........200.........210.........220.........230 .........240.........250.
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Query Sequence  LIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRVAVM. . . . . . QNGRCVEQNYAATLFASPTHP
Query Conservation 






  

      
   
  
    
 


 


    
    


 

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Template Conservation   






 

      
   
  
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Template Sequence  YVLDEPSIGLHQRDNRRLIETLTRLRDL. GNTLIVVEHDEDTIE. HADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSI
Template Known Secondary structure 
TTTT

.
B

.T
SSSSSGGG

S

SS
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   524.....530.........540.........550. ........560...... ...570.........580.........590.........600.
 
   252.......260......... 270.........280.........290.........300.........310.........320.........330
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Query Sequence  YTQKLLNSEPSGDPVPLP. EPASTLLDVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGL
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Template Sequence  TGAYLSGRESIEIPAIRRSVDPRRQLTVVGAREHN. . . . . . . . . . . . . . . . LRGIDVSFPLGVLTSVTGVSGSGKSTLVN
Template Known Secondary structure  TS





SS




TTS
STT................

SSSSSTTSS
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   602.......610.........620.........630...... ...640.........650.........660.....
 
   331..... ...340.........350.........360.........370....
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Query Sequence  . . ALLRLI. NSQGSIIFDGQPLQNLNRRQLLPIRHRIQVVFQDPNSS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation    
         
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Template Sequence  DILAAVLANRLNGARQVPGRHTRVTG. . . . LDYLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKP
Template Known Secondary structure  TTS






SS


....GGG




S
S
SSTT
STTSTTT

G
Template Predicted Secondary structure 














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   666...670.........680.........690. ........700.........710.........720.........730.........740.
 
   375....380.........390.........400....
Predicted Secondary structure  ..................................................











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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LNPRLNVLQIIEEGLRVHQPTLSAAQREQQ
Query Conservation  ..................................................
    

   
                   
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Template Conservation     
 
   
      
 
        
           
       
        
   
     
             
Template Sequence  GRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIAGVHR
Template Known Secondary structure  GGS
TTSTTTB
SSSTTSS

SSS


TTTTS
SB
T

BTTB
TSBSTT
Template Predicted Secondary structure 




















































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   742.......750.........760.........770.........780.........790.........800.........810.........820.
 
   405....410.........420.........430.........440... ......450.........460.........470.........480.
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Query Sequence  VIAVMHEVGLDPETRHRYPAEFSGGQRQRIAIARALILK. . . PSLIILDEPTSSLDKTVQAQILTLLKSLQQKHQLAYLF
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Template Sequence  YLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGN. TVIV
Template Known Secondary structure  SS
SSSBTT

GGGS
SSS


SS
SSSTT

T
.
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   822.......830.........840.........850.........860.........870.........880.........890...... ...900
 
   482.......490......... 500.........510.........520.....
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Query Sequence  ISHDLHVVRALCHQVIIL. . . . . . RQGEVVEQGPCARVFATPQQEYTRQL
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Template Conservation 


 
  
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Template Sequence  IEHNLDVI. KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAVPASYTGKFL
Template Known Secondary structure 


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SSSSTTS
S
S
TT
SS
Template Predicted Secondary structure 

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   901....... .910.........920.........930.........940.........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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