Job Description P33916 Confidence 100.00% Date Thu Jan 5 11:52:44 GMT 2012 Rank 8 Aligned Residues 423 % Identity 22% Template c2vf7B_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans Resolution 2.30 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	L	S	G	D	I	R	F	H	G	E	S	L	L	H	A	S	D	Q	T	L	R	G	V	R	G	N	K	I	A	M	I	F	Q	E	P	M	V	S	L	N	P	L	H	T	L	E	K	Q	L	Y	E	V	L	S	L	H	R	G	M	R	R	E	A	A	R	G	E	I	L	N	C	L	D	R	V	G	I	R
Query Conservation
Alig confidence																														.	.	.	.						.	.
Template Conservation																														.	.	.	.						.	.
Template Sequence		R	Q	E	A	L	N	V	T	F	A	G	L	D	I	T	E	L	S	R	L	P	L	A	R	V	S	E	L	.	.	.	.	L	R	P	Y	A	.	.	E	E	R	E	P	G	H	A	E	R	V	K	N	R	P	E	Q	A	I	A	L	Q	R	M	A	A	D	L	V	K	R	L	D	V	L	L	H	L	G	L	G
Template Known Secondary structure							T		B	B	T	T	B						T	T	S	B								.	.	.	.						.	.		T		S	T	T																																T	T		T
Template Predicted Secondary structure																														.	.	.	.						.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.					.	.	.	.	.			.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		Q	A	A	K	R	L	T	D	Y	P	H	Q	L	S	G	G	E	R	Q	R	V	M	I	A	M	A	L	L	T	R	P	E	.	.	L	L	I	A	D	E	P	T	T	A	L	D	V	S	V	Q	A	Q	I	L	Q	L	L	R	E	L	Q	G	E	L	N	M	G	M	L	F	I	T	H	N	L	S	I	V	R	K
Query Conservation																																		.	.
Alig confidence					.	.																												.	.																												.																		.
Template Conservation					.	.																																																									.																		.
Template Sequence		Y	L	G	.	.	L	D	R	S	T	P	T	L	S	P	G	E	L	Q	R	L	R	L	A	T	Q	L	Y	S	N	L	F	G	V	V	Y	V	L	D	E	P	S	A	G	L	H	P	A	D	T	E	A	L	L	S	A	L	E	N	L	K	.	R	G	G	N	S	L	F	V	V	E	H	D	L	D	V	I	R	.
Template Known Secondary structure		T	S	B	.	.	S	S		B	G	G	G	S														T	T	S				S								T	T	T	T			T	T	S													.	T	T	T															.
Template Predicted Secondary structure					.	.																																																									.																		.
Template SS confidence
		370	.	.			.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
		223	.	.	.	.	.	.	230							.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.
Query Sequence		L	A	H	R	V	A	V	M	.	.	.	.	.	.	Q	N	G	R	C	V	E	Q	N	Y	A	A	T	L	F	A	S	P	T	H	P	Y	T	Q	K	L	L	N	S	E	P	S	G	D	P	V	P	L	P	E	P	A	S	T	L	L	D	V	E	Q	L	Q	V	A	F	P	I	R	K	G	I	L	K	R	I	V
Query Conservation										.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.																																	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	D	W	L	V	D	V	G	P	E	A	G	E	K	G	G	E	I	L	Y	S	G	P	P	E	G	L	K	H	V	P	E	S	Q	T	G	Q	Y	L	F	A	D	R	H	T	.	.	E	P	H	T	P	R	E	P	A	G	W	L	E	L	N	G	V	T	R	N	N	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S							S	S	S	G	G	G			S							G	G	G	G	G	S		T	T									T					.	.									S											T	T	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.			.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	H	N	V	V	V	K	N	I	S	F	T	L	R	A	G	E	T	L	G	L	V	G	E	S	G	S	G	K	S	T	T	G	L	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	L	D	N	L	D	V	R	F	P	L	G	V	M	T	S	V	T	G	V	S	G	S	G	K	S	T	L	V	S	Q	A	L	V	D	A	L	A	A	H	F	G	Q	G	S	A	R	L	G	G	D	L	A	Q	I	T	R	L	V	R	V	D	Q	K	P	I	G	R	T	P	R	S	N	M	A	T
Template Known Secondary structure		.	.	.	.	.											S	S							S	T	T	S	S						T	T										S									S	S	G	G	G									S	S		S		S	S	T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
																																						333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	L	I	N	S	Q	G	S	I	I	F	D	G	Q	P	L	Q	N	L	N	R	R	Q	L	L	P	I	R	H	R	I	Q	V	V	F	Q	D	P	N	S	S	L	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	T	G	L	F	D	Q	V	R	K	L	F	A	A	T	P	L	A	K	K	R	G	Y	N	A	G	R	F	S	F	N	V	K	G	G	R	C	E	H	C	Q	G	E	G	W	V	M	V	P	S	V	Y	A	P	C	P	V	C	H	G	T	R	Y	N	A	E	T	L	E	V	E	Y	R	G	K	N	I	A	D	V
Template Known Secondary structure				T	T								T	T	S	S	T					S				T	T	S	S		S	S	S	S	S	S	B		S	S	S	T	T														T	T	T	S	S	S		B		T	T	G	G	G			S	S	S
Template Predicted Secondary structure
Template SS confidence
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.				.	.	.	.	450	.	.	.
Predicted Secondary structure																																																																							.	.	.
Query SS confidence																																																																							.	.	.
Query Sequence		P	R	L	N	V	L	Q	I	I	E	E	G	L	R	V	H	Q	P	T	L	S	A	A	Q	R	E	Q	Q	V	I	A	V	M	H	E	V	G	L	D	P	E	T	R	H	R	Y	P	A	E	F	S	G	G	Q	R	Q	R	I	A	I	A	R	A	L	I	L	K	P	S	.	.	.	L	I	I	L	D	E	P	T
Query Conservation																																																																							.	.	.
Alig confidence												.	.	.	.	.	.	.	.																																																				.	.	.
Template Conservation												.	.	.	.	.	.	.	.
Template Sequence		L	A	L	T	V	D	E	A	H	D	.	.	.	.	.	.	.	.	F	F	A	D	E	S	A	I	F	R	A	L	D	T	L	R	E	V	G	L	G	Y	L	R	L	G	Q	P	A	T	E	L	S	G	G	E	A	Q	R	I	K	L	A	T	E	L	R	R	S	G	R	G	G	T	V	Y	V	L	D	E	P	T
Template Known Secondary structure			T		B							.	.	.	.	.	.	.	.		T	T	T															T		T	T	S	B	T	T			G	G	G			S															S	S	S	S									S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.
Template SS confidence
		690	.	.	.	.	.	.	.	.	.									700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.							500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.
Query Sequence		S	S	L	D	K	T	V	Q	A	Q	I	L	T	L	L	K	S	L	Q	Q	K	H	Q	L	A	Y	L	F	I	S	H	D	L	H	V	V	R	A	L	C	H	Q	V	I	I	L	.	.	.	.	.	.	R	Q	G	E	V	V	E	Q	G	P	C	A	R	V	F	A	T	P	Q	Q	E	Y	T	R	Q	L
Query Conservation																																																.	.	.	.	.	.
Alig confidence																									.													.										.	.	.	.	.	.
Template Conservation																									.													.
Template Sequence		T	G	L	H	P	A	D	V	E	R	L	Q	R	Q	L	V	K	L	V	D	A	G	N	.	T	V	I	A	V	E	H	K	M	Q	V	V	.	A	A	S	D	W	V	L	D	I	G	P	G	A	G	E	D	G	G	R	L	V	A	Q	G	T	P	A	E	V	A	Q	A	A	G	S	V	T	A	P	Y	L
Template Known Secondary structure		S	S																			T	T		.													.	T	T		S							S	S	S	G	G	G			S						S						T		S	S		S	S
Template Predicted Secondary structure																									.													.
Template SS confidence
		762	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.		.	.	.	.	.	790	.	.	.	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.