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Job DescriptionP33916
Confidence100.00%DateThu Jan 5 11:52:44 GMT 2012
Rank27Aligned Residues220
% Identity28%Templatec2pcjB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:lipoprotein-releasing system atp-binding protein lold; PDBTitle: crystal structure of abc transporter (aq_297) from aquifex aeolicus2 vf5
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
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Query Sequence  TLLAIENLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVEYLSGDIRFHGESLLHASD
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Template Sequence  EILRAENIKKVI. . . . RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD. . . . . APTEGKVFLEGKEVDYTNE
Template Known Secondary structure  ....TTTT


TTS
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   3......10.... .....20.........30.........40.........50.... .....60.........70...
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
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Query Sequence  QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ
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Template Sequence  KELSLLRNRKLGFVFQFHY. . LIPELTALENVIVPMLKM. GKPKKEAKERGEYLLSELGLGDK. . . LSRKPYELSGGEQQ
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   74.....80.........90.. .......100.........110 .........120.........130... ......140.......
 
   164.....170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  RVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRVAVMQNGRCVEQNY
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Template Sequence  RVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG. GTSIVMVTHERELA. ELTHRTLEMKDGKVVGEIT
Template Known Secondary structure  TT

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   148.150.........160.........170.........180......... 190.........200... ......210.........220..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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