Job Description P33916 Confidence 97.55% Date Thu Jan 5 11:52:44 GMT 2012 Rank 125 Aligned Residues 125 % Identity 26% Template c2j7pA_ PDB info PDB header:signal recognition Chain: A: PDB Molecule:signal recognition particle protein; PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy Resolution 1.97 Å

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		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	A	G	E	T	L	G	L	V	G	E	S	G	S	G	K	S	T	T	G	L	A	L	L	R	L	I	N	S	Q	G	S	I	I	F	D	G	Q	P	L	Q	N	L	N	R	R	Q	L	L	P	I	R	H	R	I	Q	V	V	F	Q	D	P	N	S	S	L	N	P	R	L	N	V	L	Q	I	I	E	E	G
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	L	L	V	A	A	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S	S								S	T	T	S	S														T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.																						.	.	130	.	.	.	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	V	H	Q	P	T	L	S	A	A	Q	R	E	Q	Q	V	I	A	V	M	H	E	V	G	L	D	P	E	T	R	H	R	Y	P	A	E	F	S	G	G	Q	R	Q	R	I	A	I	A	R	A	L	I	L	K	P	S	L	I	I	L	D	E	P	T	S	S	L	D	K	T	V	Q	A	Q	I	L	T	L	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																				.	.	.
Template Conservation		.	.	.	.	.	.	.	.																				.	.	.
Template Sequence		.	.	.	.	.	.	.	.	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	.	.	.	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	S	S	T	T													T			.	.	.						T	T																	T	T													T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																				.	.	.
Template SS confidence
										137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	L	Q	Q	K	H	Q	L	A	Y	L	F	I	S
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		K	E	V	L	G	P	D	E	.	V	L	L	V	L	D
Template Known Secondary structure								S		.
Template Predicted Secondary structure										.
Template SS confidence
		206	.	.	.	210	.	.	.		.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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