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Job DescriptionP33916
Confidence100.00%DateThu Jan 5 11:52:44 GMT 2012
Rank21Aligned Residues234
% Identity26%Templatec1z47B_
PDB info PDB header:ligand binding proteinChain: B: PDB Molecule:putative abc-transporter atp-binding protein; PDBTitle: structure of the atpase subunit cysa of the putative2 sulfate atp-binding cassette (abc) transporter from3 alicyclobacillus acidocaldarius
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   276...280.........290.........300.........310.........320.........330...... ...340.........350....
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Query Sequence  LDVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGLALLRLI. NSQGSIIFDGQPLQNLNR
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Template Sequence  IEFVGVEKIYP. . . . . . . . . . GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP
Template Known Secondary structure 

T..........TSTT

TT

STTSSTSS

STT
TT

G
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   15....20..... ....30.........40.........50.........60.........70.........80....
 
   355....360.........370.........380.........390.........400.........410.........420.........430....
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Query Sequence  RQLLPIRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMHEVGLDPETRHRYPAEFSGGQRQRI
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Template Sequence  Q. . . . . KRNVGLVFQNY. . ALFQHMTVYDNVSFGLR. . EKRVPKDEMDARVRELLRFMRLE. SYANRFPHELSGGQQQRV
Template Known Secondary structure  G.....GSSTT
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TTS
TTGG..GTT

TT
G.GGTTS
GGGS
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   85 ....90...... ...100.........110... ......120.........130...... ...140.........150....
 
   435....440.........450.........460.........470.........480.........490.........500.........510....
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Query Sequence  AIARALILKPSLIILDEPTSSLDKTVQAQILTLLKSLQQKHQLAYLFISHDLHVVRALCHQVIILRQGEVVEQGPCARVF
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Template Sequence  ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVY
Template Known Secondary structure  TT

SSTTTTS


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   155....160.........170.........180.........190.........200.........210.........220.........230....
 
   515....520.........
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Query Sequence  ATPQQEYTRQLLALS
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Template Sequence  EKPGTLFVASFIGES
Template Known Secondary structure  S
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   235....240.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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