Job Description P33916 Confidence 99.02% Date Thu Jan 5 11:52:44 GMT 2012 Rank 80 Aligned Residues 277 % Identity 13% Template c1wxqA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:gtp-binding protein; PDBTitle: crystal structure of gtp binding protein from pyrococcus horikoshii2 ot3 Resolution 2.60 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	A	L	V	G	E	S	G	S	G	K	S	V	T	A	L	S	I	L	R	L	L	P	S	P	P	V	E	Y	L	S	G	D	I	R	F	H	G	E	S	L	L	H	A	S	D	Q	T	L	R	G	V	R	G	N	K	I	A	M	I	F	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.
Template Sequence		E	I	G	V	V	G	K	P	N	V	G	K	S	T	F	F	S	A	A	T	L	A	N	.	.	.	.	.	V	G	V	T	Y	A	I	T	D	H	P	C	K	E	L	G	C	S	P	N	P	Q	N	Y	E	Y	R	N	G	L	A	L	I	P	V	K	X	V	D	V	A	F	L	D	D	L	R	X	A	S	A	L
Template Known Secondary structure									T	T	S	S													.	.	.	.	.											S		S	S	S			S				S	S	S				T	T																S	S	T	T		S
Template Predicted Secondary structure																									.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.						.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
																100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	M	V	S	L	N	P	L	H	T	L	E	K	Q	L	Y	E	V	L	S	L	H	R	G	M	R	R	E	A	A	R	G	E	I	L	N	C	L	D	R	V	G	I	R	Q	A	A	K	R	L	T	D	Y	P	H	Q	L	S	G	G	E	R	Q	R	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.																						.	.
Template Conservation																																						.	.	.	.																						.	.
Template Sequence		I	H	V	V	D	A	T	G	K	T	D	P	E	G	Q	P	T	D	Y	H	D	P	V	E	D	I	E	F	L	E	R	E	I	D	Y	W	.	.	.	.	I	Y	G	I	L	S	K	G	W	D	K	F	A	K	R	I	K	L	Q	K	I	.	.	K	L	E	S	A	I	A	E	H	L	S	G	I	G	V	N	E
Template Known Secondary structure							T	T			B		T	T	S		B		S																			.	.	.	.							T	T	T					S	T	T	T	S	S			.	.										T	G	G	G	T
Template Predicted Secondary structure																																						.	.	.	.																						.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.					.	.	.	.	.	240	.
Predicted Secondary structure																																																																							.	.	.	.
Query SS confidence																																																																							.	.	.	.
Query Sequence		M	I	A	M	A	L	L	T	R	P	E	L	L	I	A	D	E	P	T	T	A	L	D	V	S	V	Q	A	Q	I	L	Q	L	L	R	E	L	Q	G	E	L	N	M	G	M	L	F	I	T	H	N	L	S	I	V	R	K	L	A	H	R	V	A	V	M	Q	N	G	R	.	.	.	.	C	V	E	Q	N	Y	A
Query Conservation																																																																							.	.	.	.
Alig confidence																																.	.								.	.	.	.																											.	.	.	.
Template Conservation																																.	.								.	.	.	.
Template Sequence		N	D	V	W	E	A	X	H	K	L	N	L	P	E	D	P	T	K	W	S	Q	D	D	L	L	A	F	A	S	E	.	.	I	R	R	V	N	K	P	.	.	.	.	X	V	I	A	A	N	K	A	D	A	A	S	D	E	Q	I	K	R	L	V	R	E	E	E	K	R	G	Y	I	V	I	P	T	S	A	A	A
Template Known Secondary structure											T	T			S		G	G	G													.	.						S		.	.	.	.								G	G	G	S															T	T
Template Predicted Secondary structure																																.	.								.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.										.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Query Sequence		A	T	L	F	A	S	P	T	H	P	Y	T	Q	K	L	L	N	S	E	P	S	G	D	P	V	P	L	P	E	P	A	S	T	L	.	.	.	.	.	.	.	.	.	L	D	V	E	Q	L	Q	V	A	F	P	I	R	K	G	I	L	K	R	I	V	D	H	N	V	V	V	K	N	.	.	.	.	.	.	.	.
Query Conservation																																				.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	T	L	R	K	A	A	K	A	G	F	I	E	Y	I	P	A	L	X	V	I	K	E	K	V	L	D	R	F	G	S	T	G	V	Q	E	V	I	N	R	V	V	F	D	L	L	K	L	I	P	V	Y	P	V	H	D	E	Q	F	G	N	V	L	P	H	V	F	L	X	K	K	G	S	T	P	R	D	L	A
Template Known Secondary structure							S		S	S	S					S				T	T							T	S	S	S	S	S		S											T	T	S									S					S		S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
				305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330
Predicted Secondary structure		.	.																				.	.
Query SS confidence		.	.																				.	.
Query Sequence		.	.	I	S	F	T	L	R	A	G	E	T	L	G	L	V	G	E	S	G	S	.	.	G	K	S	T	T	G	L
Query Conservation		.	.																				.	.
Alig confidence		.	.																				.	.
Template Conservation
Template Sequence		F	K	V	H	T	D	L	G	K	G	F	L	Y	A	I	N	A	R	T	K	R	R	V	G	E	D	Y	E	L	Q
Template Known Secondary structure											T							T	T	T		S	B			T	T
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions