Job Description P33916 Confidence 99.11% Date Thu Jan 5 11:52:44 GMT 2012 Rank 79 Aligned Residues 171 % Identity 16% Template c1q57G_ PDB info PDB header:transferase Chain: G: PDB Molecule:dna primase/helicase; PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7 Resolution 3.45 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		V	K	N	I	S	F	T	L	R	A	G	E	T	L	G	L	V	G	E	S	G	S	G	K	S	T	T	G	L	A	L	L	R	L	I	.	N	S	Q	G	S	I	I	F	D	G	Q	P	L	Q	N	L	N	R	R	Q	L	L	P	I	R	H	R	I	Q	V	V	F	Q	D	P	N	S	S	L	N	P	R	L	N
Query Conservation																																					.
Alig confidence																																					.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	N	D	K	T	L	G	A	R	G	G	E	V	I	M	V	T	S	G	S	G	M	V	M	S	T	F	V	R	Q	Q	A	L	Q	W	G	T	A	M	G	K	K	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	M	L	E	E	S
Template Known Secondary structure											T	T								S	S		S														T	T	T	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.																														.	340	.	.	.	.	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.												.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.			.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Query Sequence		V	L	Q	I	I	E	E	G	L	R	V	H	Q	P	T	.	.	.	.	.	.	.	.	.	.	.	L	S	A	A	Q	R	E	Q	Q	V	I	A	V	M	H	E	V	G	L	D	P	E	T	R	H	R	Y	P	A	E	F	S	G	G	Q	R	Q	R	I	A	I	.	.	A	R	A	L	I	L	K	P	S	L	I
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Template Conservation
Template Sequence		V	E	E	T	A	E	D	L	I	G	L	H	N	R	V	R	L	R	Q	S	D	S	L	K	R	E	I	I	E	N	G	K	F	D	Q	W	F	D	E	L	F	G	N	D	T	F	H	L	Y	D	S	F	E	T	D	R	L	L	A	K	L	A	Y	M	R	S	G	L	G	C	D	V	I	I	L	D	H	I	S	I
Template Known Secondary structure														T	T	S			T	T											T	S											T	T	T																							T	T			S							T	T
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.																							.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	L	D	E	P	T	S	S	L	D	K	T	V	Q	A	Q	I	L	T	L	L	K	S	L	Q	Q	K	H	Q	L	A	Y	L	F	I	S	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	H	V	V	R	A	L	C	H	Q	V	I	I	L	R	Q
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	S	A	S	G	E	S	D	E	R	K	M	I	D	N	L	M	T	K	L	K	G	F	A	K	S	T	G	V	V	L	V	V	I	C	H	L	K	N	P	D	K	G	K	A	H	E	E	G	R	P	V	S	I	T	D	L	R	G	S	G	A	L	R	Q	L	S	D	T	I	I	A	L	E	R
Template Known Secondary structure				S			S																							T													S	S	S	S		S	T	T						S	T	T		S	S	S	S							S
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions