 |
Job Description | P00370 | Confidence | 97.50% | Date | Thu Jan 5 10:56:35 GMT 2012 |
Rank | 94 | Aligned Residues | 109 |
% Identity | 17% | Template | d1dssg1 |
SCOP info | NAD(P)-binding Rossmann-fold domains
| NAD(P)-binding Rossmann-fold domains
| Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
|
Resolution | 1.88 |
|
 |
  |   |
233 | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | |
|
|
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|  |  | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
Query Sequence |   |
M | R | V | S | V | S | G | S | G | N | V | A | Q | Y | A | I | E | K | A | M | E | F | G | A | R | V | I | T | A | S | D | S | S | G | T | V | V | D | E | S | G | F | T | K | E | K | L | A | R | L | I | E | I | K | A | S | R | D | G | R | V | A | D | Y | A | K | E | F | G | L | V | Y | L | E | G | Q | Q | . |
. |
. |
Query Conservation |   |
  |   |
|
|
|
|
|   |
|
|
|
|   |   |   |
|   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|   |   |
|   |
|
|
|
|   |
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
Template Conservation |   |
  |
|
|
|
|
|
|
|
|
|
|
|
|   |
|   |
|
|   |   |   |   |   |   |   |
|
|
|
|
|
|   |   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|
|
|
|   |   |
|
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|   |
|   |   |
|   |
|
Template Sequence |   |
S | K | I | G | I | N | G | F | G | R | I | G | R | L | V | L | R | A | A | L | E | M | G | A | Q | V | V | A | V | N | D | P | F | . |
. |
. |
. |
. |
. |
. |
. |
I | A | L | E | Y | M | V | Y | M | F | K | Y | D | S | T | H | G | M | F | K | G | E | V | K | A | E | D | G | A | L | V | V | D | G | K | K | I | T | V |
Template Known Secondary structure |   |
|
|  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |
| T | T | . | . | . | . | . | . | . | . | S |
|  |  |  |  |  |  |  |  |  |
|
| T | T | T |
|
|
| S | S |
|  |  |  |  | T | T |  |  |  |  | T | T |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . |
  |
  |   |
|
|
|
|
|
|
|
|
|
|
310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | W | S | L | P | V | D | I | A | L | P | C | A | T | Q | N | E | L | D | V | D | A | A | H | Q | L | I | A | N | G | V | K | A | V | A | E | G | A | N | M | P |
Query Conservation |   |
. | . | . | . | . | . | . | . | . | . |   |
|   |   |   |   |
|
|
|
|
|
|
|   |   |   |   |
|   |   |   |
|
|   |   |
|   |
|   |   |   |
|
|
|
|
|
|
|
|   |
|
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|   |   |
|   |
|   |   |   |
|
|
|
|
|
|
|   |
| . |
|   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|
|
|
|
|
|
|
|
|   |   |
Template Sequence |   |
F | N | E | M | K | P | E | N | I | P | W | S | K | A | G | A | E | Y | I | V | E | S | T | . |
G | V | F | T | T | I | E | K | A | S | A | H | F | K | G | G | A | K | K | V | I | I | S | A | P | S | A |
Template Known Secondary structure |   |
 |
|
| S | S | G | G | G |
|
|  |  |  |  | T |
|
|  |  |  |  |
| S | . | S | S |
|
| S |  |  |  |  | G | G | G | G | T | T | T |
| S |  |  |  |  | S | S |
|
| S |
Template Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |
|
|
|  |  |
|
|
|
|  |  |  |  |
|
| . |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
74 | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | |
. | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|