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Job DescriptionP00370
Confidence100.00%DateThu Jan 5 10:56:35 GMT 2012
Rank1Aligned Residues439
% Identity52%Templatec2bmaA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:glutamate dehydrogenase (nadp+); PDBTitle: the crystal structure of plasmodium falciparum glutamate2 dehydrogenase, a putative target for novel antimalarial3 drugs
Resolution2.7 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.....
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Query Sequence  SLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQIQVNRAWRVQFS
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Template Sequence  EMNNVYERVMKLDPNQVEFLQAFHEILYSLKPLFMEEPKYLP. . IIETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYN
Template Known Secondary structure  STT
T
TT..TS
S
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   3......10.........20.........30.........40.... .....50.........60.........70.........80
 
   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  SAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVP
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Template Sequence  SALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVP
Template Known Secondary structure 
SSSS
TT

T
SS
S


TT

GGG
BTTT
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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   166...170.........180.........190.........200.........210.........220.........230.........240.....
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Query Sequence  AGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQ
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Template Sequence  AGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVAL
Template Known Secondary structure 

SS




S
SSSS

GGGT

TTTTTTTT

GGG

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   163......170.........180.........190.........200.........210.........220.........230.........240..
 
   246...250.........260.........270.........280.........290....... ..300.........310.........320....
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Query Sequence  YAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYA. KEFGLVYLEGQQPWSLPVDIALPCATQ
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Template Sequence  YCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQ
Template Known Secondary structure  TT

TT
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TTTT

GGGGGGT
SS

SS

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   244.....250.........260.........270.........280.........290.........300.........310.........320...
 
   325....330.........340.........350.........360.........370.........380.........390.........400....
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Query Sequence  NELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHH
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Template Sequence  NDVDLDQAKLLQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKE
Template Known Secondary structure  T
B
STT



SSS
B
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   324.....330.........340.........350.........360.........370.........380.........390.........400...
 
   405....410.........420 .........430.........440......
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Query Sequence  IMLDIHHACVEHGGEG. . EQTNYVQGANIAGFVKVADAMLAQGV
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Template Sequence  IMRNIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGC
Template Known Secondary structure  S
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   405....410.........420.........430.........440........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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