Job Description P00370 Confidence 97.72% Date Thu Jan 5 10:56:35 GMT 2012 Rank 67 Aligned Residues 209 % Identity 15% Template c1gz3B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nad-dependent malic enzyme; PDBTitle: molecular mechanism for the regulation of human mitochondrial2 nad(p)+-dependent malic enzyme by atp and fumarate Resolution 2.3 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	K	S	E	G	E	V	M	R	F	C	Q	A	L	M	T	E	L	Y	R	H	L	G	A	D	T	D	V	P	A	G	D	I	G	V	G	G	R	E	V	G	F	M	A	G	M	M	K	K	L	S	N	N	T	A	C	V	F	T	G	K	G	L	S	F	G	G	S	L	I	R	P	E	A	T	G	Y	G	L
Query Conservation
Alig confidence																																						.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	R	D	R	T	Q	Q	Y	D	D	L	I	D	E	F	M	K	A	I	T	D	R	Y	G	R	N	T	L	I	Q	F	E	D	F	G	N	.	.	H	N	A	F	R	F	L	R	K	Y	R	E	K	Y	C	T	F	N	D	D	I	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	A	V	A
Template Known Secondary structure						S																				T	T							S				.	.											T	T	T	S	S				T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																						.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.															.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.											.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		V	Y	F	T	E	A	M	L	K	R	H	G	M	G	F	E	G	M	R	V	S	V	S	G	S	G	N	V	A	Q	Y	A	I	E	K	A	M	E	F	G	A	R	V	.	.	.	.	.	.	.	.	.	.	I	T	A	S	D	S	S	G	T	V	V	D	E	S	G	.	.	F	T	K	E	K	L	A	R	L	I
Query Conservation																																													.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		L	A	G	L	L	A	A	Q	K	V	I	S	K	P	I	S	E	H	K	I	L	F	L	G	A	G	E	A	A	L	G	I	A	N	L	I	V	M	S	M	V	E	N	G	L	S	E	Q	E	A	Q	K	K	I	W	M	F	D	K	Y	G	L	L	V	K	G	R	K	A	K	I	D	S	Y	Q	E	P	F	T	H
Template Known Secondary structure																T	T	T									S																	T	T									T						T	T				B	T	T		S	S				T	T	T	G	G	G		B
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340			.	.	.	.	.	.	.	.	.				350		.	.	.	.	.	.
Predicted Secondary structure																																								.																				.	.										.	.	.		.
Query SS confidence																																								.																				.	.										.	.	.		.
Query Sequence		E	I	K	A	S	R	D	G	R	V	A	D	Y	A	K	E	F	G	L	V	Y	L	E	G	Q	Q	P	W	S	L	P	V	D	I	A	L	P	C	.	A	T	Q	N	E	L	D	V	D	A	A	H	Q	L	I	A	N	G	V	.	.	K	A	V	A	E	G	A	N	M	.	.	.	P	.	T	T	I	E	A	T
Query Conservation																																								.																				.	.										.	.	.		.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.																.																		.		.	.										.	.	.		.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Sequence		S	A	P	E	S	I	P	D	T	F	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	A	V	N	I	L	K	P	S	T	I	I	G	V	A	G	A	G	R	L	F	T	P	D	V	I	R	A	M	A	S	I	.	N	E	R	P	V	I	F	A	L	S	N	P	T	A	Q	A	E	C	T	A	E	E	A
Template Known Secondary structure					S	S			S	S		.	.	.	.	.	.	.	.	.	.	.	.	.										S							S	S	S			S												.		S	S								S	S	G	G	G	S	S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template SS confidence
		368	.	370	.	.	.	.	.	.	.														.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
		357	.	.	360	.																		.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	F	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	V	L	F	A	P	G	K	A	A	N	A
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	T	L	T	E	G	R	C	L	F	A	S	G	S	P	F	G	P	V	K	L	T	D	G	R	V	F	T	P	G	Q	G	N	N	V
Template Known Secondary structure					T	T	T							S	S								T	T	S										G	G
Template Predicted Secondary structure
Template SS confidence
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions