Job Description P00370 Confidence 100.00% Date Thu Jan 5 10:56:35 GMT 2012 Rank 6 Aligned Residues 407 % Identity 30% Template c1bvuF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:protein (glutamate dehydrogenase); PDBTitle: glutamate dehydrogenase from thermococcus litoralis Resolution 2.50 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	A	V	R	E	V	M	T	T	L	W	P	F	L	E	Q	N	P	K	Y	R	Q	M	S	L	L	E	R	L	V	E	P	E	R	V	I	Q	F	R	V	V	W	V	D	D	R	N	Q	I	Q	V	N	R	A	W	R	V	Q	F	S	S	A	I	G	P	Y	K	G	G	M	R	F	H	P	S	V	N	L	S
Query Conservation
Alig confidence																						.	.	.	.	.
Template Conservation																						.	.	.	.	.
Template Sequence		F	E	I	A	V	K	Q	L	E	R	A	A	Q	Y	M	D	I	S	E	E	.	.	.	.	.	A	L	E	F	L	K	R	P	Q	R	I	V	E	V	S	I	P	V	E	M	D	D	G	S	V	K	V	F	T	G	F	R	V	Q	Y	N	W	A	R	G	P	T	K	G	G	I	R	W	H	P	E	E	T	L	S
Template Known Secondary structure														T	T	S						.	.	.	.	.					T	T	S		S												T	T	S															T	T	S	S									T	T
Template Predicted Secondary structure																						.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.						.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	K	F	L	G	F	E	Q	T	F	K	N	A	L	T	T	L	P	M	G	G	G	K	G	G	S	D	F	D	P	K	G	K	S	E	G	E	V	M	R	F	C	Q	A	L	M	T	E	L	Y	R	H	L	G	A	D	T	D	V	P	A	G	D	I	G	V	G	G	R	E	V	G	F	M	A	G	M	M	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	K	A	L	A	A	W	M	T	W	K	T	A	V	M	D	L	P	Y	G	G	G	K	G	G	V	I	C	N	P	K	E	M	S	D	R	E	K	E	R	L	A	R	G	Y	V	R	A	I	Y	D	V	I	S	P	Y	T	D	I	P	A	P	D	V	Y	T	N	P	Q	I	M	A	W	M	M	D	E	Y	E
Template Known Secondary structure																		T		S										S		G	G	G																	S	G	G	G		B	T	T	T					B		T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		185	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260
Predicted Secondary structure						.	.	.																																																																			.
Query SS confidence						.	.	.																																																																			.
Query Sequence		K	L	S	N	.	.	.	N	T	A	C	V	F	T	G	K	G	L	S	F	G	G	S	L	I	R	P	E	A	T	G	Y	G	L	V	Y	F	T	E	A	M	L	K	R	H	G	M	G	F	E	G	M	R	V	S	V	S	G	S	G	N	V	A	Q	Y	A	I	E	K	A	M	E	F	.	G	A	R	V	I	T
Query Conservation						.	.	.																																																																			.
Alig confidence						.	.	.																																																																			.
Template Conservation
Template Sequence		T	I	S	R	R	K	D	P	S	F	G	V	I	T	G	K	P	P	S	V	G	G	I	V	A	R	M	D	A	T	A	R	G	A	S	Y	T	V	R	E	A	A	K	A	L	G	M	D	L	K	G	K	T	I	A	I	Q	G	Y	G	N	A	G	Y	Y	M	A	K	I	M	S	E	E	Y	G	M	K	V	V	A
Template Known Secondary structure					T	T	S	S		G	G	G	S			S			G	G	G	T			S	S	T	T	T																	T	T				T	T									S													T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	D	S	S	G	T	V	V	D	E	S	G	F	T	K	E	K	L	A	R	L	I	E	I	K	A	S	R	D	G	R	V	A	D	Y	A	K	E	F	G	L	V	Y	L	E	G	Q	Q	P	W	S	L	P	V	D	I	A	L	P	C	A	T	Q	N	E	L	D	V	D	A	A	H	Q	L	I	A	N	G	V
Query Conservation
Alig confidence																											.	.	.	.									.	.	.																																						.	.	.
Template Conservation																											.	.	.	.									.	.	.																																						.	.	.
Template Sequence		V	S	D	T	K	G	G	I	Y	N	P	D	G	L	N	A	D	E	V	L	A	W	K	K	K	.	.	.	.	T	G	S	V	K	D	F	P	.	.	.	G	A	T	N	I	T	N	E	E	L	L	E	L	E	V	D	V	L	A	P	S	A	I	E	E	V	I	T	K	K	N	A	D	N	I	K	A	.	.	.
Template Known Secondary structure					T	T						T	T														.	.	.	.		S	S	S	T	T		T	.	.	.	T	S										T	S			S						S		S	S		B						T	T				.	.	.
Template Predicted Secondary structure																											.	.	.	.									.	.	.																																						.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.					.	.	.	.	270	.	.	.				.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	V	A	E	G	A	N	M	P	T	T	I	E	A	T	E	L	F	Q	Q	A	G	V	L	F	A	P	G	K	A	A	N	A	G	G	V	A	T	S	G	L	E	M	A	Q	N	A	A	R	L	G	W	K	A	E	K	V	D	A	R	L	H	H	I	M	L	D	I	H	H	A	C	V	E	H	G	G	E	G
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		K	I	V	A	E	L	A	N	G	P	T	T	P	E	A	D	E	I	L	Y	E	K	G	I	L	I	I	P	D	F	L	C	N	A	G	G	V	T	V	S	Y	F	E	W	V	Q	N	I	T	G	D	Y	W	T	V	E	E	T	R	A	K	L	D	K	K	M	T	K	A	F	W	D	V	Y	N	T	H	K	E	.
Template Known Secondary structure		S						S	S			B											T	T										T																																															.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	T	N	Y	V	Q	G	A	N	I	A	G	F	V	K	V	A	D	A	M	L	A	Q	G	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	I	N	M	R	D	A	A	Y	V	V	A	V	S	R	V	Y	Q	A	M	K	D	R	G	W	I
Template Known Secondary structure			T																						T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.