Job Description P0ACS2 Confidence 63.92% Date Thu Jan 5 11:18:53 GMT 2012 Rank 246 Aligned Residues 98 % Identity 17% Template c1l9uH_ PDB info PDB header:transcription Chain: H: PDB Molecule:sigma factor siga; PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution Resolution 4.00 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50									.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	P	G	E	V	A	K	R	S	G	V	A	V	S	A	L	H	F	Y	E	S	K	G	L	I	T	S	I	R	N	S	G	N	Q	R	R	Y	K	.	.	.	.	.	.	.	.	R	D	V	L	R	Y	V	A	I	I	K	I	A	Q	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																								.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	Y	E	E	I	A	E	A	M	G	P	G	W	D	A	K	R	V	E	E	T	L	K	I	A	Q	E	P	V	S	L	E	T	P	I	D	F	I	P	D	E	N	L	P	S	P	V	E	A	A	A	Q	S	L	L	S	E	E	L	E	K	A	L	S	K	L	S	E	R	E	A	M	V	L	K	L	R	K	G	L
Template Known Secondary structure										S		S	S											T	T		S	S		S			S		S	S	S							T	T		T	T																T	T	S	S		T	T	T	T					T	T	S	S	T
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
						67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	G	I	P	L	A	T	I	G	E	A	F	G	V	L	P	E	G	H	T	L	S	A	K	E	W	K	Q	L	S	S	Q	W	R	E	E	L	D	R	R	I	H	T	L	V	A	L	R	D	E	L	D
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.														.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.
Template Sequence		I	D	G	R	E	H	T	L	E	E	V	G	A	Y	F	G	V	.	.	.	.	.	.	.	T	R	E	R	I	R	Q	I	E	N	K	A	L	R	K	L	K	Y	H	E	S	R	T	R	K	L	R	D	F	L	E
Template Known Secondary structure		T	S	S										T	T	S		S	.	.	.	.	.	.	.																							S			G	G	G	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.								.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions