Job Description P77184 Confidence 2.56% Date Thu Jan 5 12:26:08 GMT 2012 Rank 82 Aligned Residues 138 % Identity 13% Template d1by5a_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.60

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.					.
Predicted Secondary structure																																																																													.	.	.	.
Query SS confidence																																																																													.	.	.	.
Query Sequence		R	N	R	W	F	S	V	M	V	G	P	S	V	R	V	N	E	W	F	S	A	Y	A	M	A	G	M	A	Y	S	R	V	S	T	F	S	G	D	Y	L	R	V	T	D	N	K	G	K	T	H	D	V	L	T	G	S	D	D	G	R	H	S	N	T	S	L	A	W	G	A	G	V	Q	F	N	.	.	.	.	P
Query Conservation																																																																													.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	R	A	R	G	V	E	I	E	A	K	R	P	L	S	A	S	V	N	V	V	G	S	Y	T	Y	T	D	A	E	Y	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	T	Y	K	G	N	T	P	A	Q	V	P	K	H	M	A	S	L	W	A	D	Y	T	F	F	D	G	P
Template Known Secondary structure																S	S	S	S																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	T	T				T	T			S													S	S	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		564	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.																		.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.							.	.	.	.	.	.	.				100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.								.	.	.
Query SS confidence																	.	.	.	.	.	.								.	.	.
Query Sequence		T	E	S	V	A	I	D	I	A	Y	E	G	P	G	S	.	.	.	.	.	.	G	D	W	R	T	D	G	.	.	.	F	I	V	G	V	G	Y	K	F	M	L	T	G	S	D	D	G	R	H	S	N	T	S	L	A	W	G	A	G	V	Q	F	N	P	T	E	S	V	A	I	D	I	A	Y	E	G	P	G	S
Query Conservation																	.	.	.	.	.	.								.	.	.
Alig confidence																	.	.	.	.	.	.								.	.	.										.	.	.	.	.	.	.																.
Template Conservation																																										.	.	.	.	.	.	.																.
Template Sequence		L	S	G	L	T	L	G	T	G	G	R	Y	T	G	S	S	Y	G	D	P	A	N	S	F	K	V	G	S	Y	T	V	V	D	A	L	V	R	Y	D	L	.	.	.	.	.	.	.	A	R	V	G	M	A	G	S	N	V	A	L	H	V	N	.	N	L	F	D	R	E	Y	V	A	S	C	F	N	T	Y	G	C
Template Known Secondary structure		T	T	T															S	S	T	T			S																T	.	.	.	.	.	.	.	T	T	T	T		T	T									.	S	T	T											T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.																.
Template SS confidence
		627	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.								.	.	.	670	.	.	.	.	.	.	.	.	.	680	.		.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	W	R	T	D	G	F	I	V	G	V	G	Y	K	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	W	G	A	E	R	Q	V	V	A	T	A	T	F	R	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		699	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions